The past is complicated. So is the present. Reading in @nature on the Shum Laka aDNA: Archaeological samples in a colonial museum used to argue that today's population of Cameroon are not descended from past peoples in the area. doi.org/10.1038/s41586… Extended data figure 7 from Lipson and coworkers 2020, showi
The authors emphasize discontinuity in their overall interpretation, yet data show substantial evidence of some population continuity both regionally and locally. Small fractions of ancestry from "ghost" groups are highlighted, but small fractions from modern groups downplayed.
I'm fascinated by the concept of a tree seeming to show groups a part of a pure history of divergence, yet each group shows most of its heritage came from elsewhere in the tree. Shum Laka appears as a pure representative of an ancient group, with 64% from some other group. Figure 4 from Lipson and coworkers 2020, showing a tree of r
The obvious question is why would you illustrate the 36% as the main pattern determining the place in the tree, instead of the 64%? In addition to the old unanswered question: What are these "basal" ancestry components if not a statistical artifact?
My thought today is that the contemporary and historical political complexity, and the unanswered questions about the models, are now the interesting and challenging scientific issues. Deeply redacted SNP samples of ancient genomes are not getting at these questions.
Also, why the heck is it "ghost modern" and not "basal modern". And don't these geneticists know that "basal" is a no-no term in phylogenetics?

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More from @johnhawks

8 Dec 21
Some discussion in comments last week in @ScienceMagazine about "paleodemes" with a short defense of the value of the concept. I think the paleodeme concept has most of the problems of paleo species concepts with none of their benefits. science.org/doi/10.1126/sc…
The person probably most responsible for the paleodeme concept in human origins is Clark Howell, whose 1999 paper "Paleo-Demes, Species Clades, and Extinctions in the Pleistocene Hominin Record" defined (although it did not first introduce) the concept. journals.uchicago.edu/doi/abs/10.108…
As presented by Howell, a paleodeme corresponds to a regional sample of fossils across a delimited range of time, with some morphological distinctiveness. These were groups like "Neandertal", "Skhūl/Qafzeh", or "Petralona/Atapuerca-Sima".
Read 5 tweets
13 Aug 21
Interesting paper on cutmark evidence from Olduvai, further substantiating early access to animal carcasses by tool-wielding Early Pleistocene hominins. @SciReports nature.com/articles/s4159… Cutmark evidence on animal bones from Olduvai Gorge, from Do
The paper's discussion raises lots of reasons why the anatomy of early Homo supports the idea that they were competent hunters. On this I don't disagree, but I think that focusing on "early Homo" here is misleading for several reasons.
First, "early Homo" fossils overlap substantially in anatomy with Australopithecus and Paranthropus. So much that we cannot always tell them apart (including long-standing arguments about well-known and not-so-fragmentary fossils).
Read 9 tweets
25 Jun 21
So, Homo longi. It's such a good name. Dragon people. And an amazing skull discovery. Adds to our knowledge of the Middle Pleistocene in China. But it's sad that the name is not going to stay. cell.com/the-innovation… Harbin skull viewed from the front. Photo by Wei Gao, from T
The boring reason why we can't use the Homo longi name is technical. The research puts the Harbin skull together with the Dali skull, and Xinzhi Wu gave that the name Homo sapiens daliensis more than 40 years ago. So IF there's a species, it has to be H. daliensis. Phylogenetic morphology analysis of Harbin skull, showing it
In case you wonder how close Harbin looks to Dali, here is Harbin on the left and Dali (which has some crushing to the maxilla) on the right. As Weidenreich might have said, they resemble each other as closely as one egg resembles another. Harbin skull (left) compared with Dali skull (right)
Read 13 tweets
24 Jun 21
The new report of fossil material from Nesher Ramla, Israel, claims a "previously unknown archaic Homo population" some 140,000 years ago. It's a big claim in an area where most scientists have thought that early modern humans and Neandertals interacted. science.sciencemag.org/content/372/65… Mandible from Nesher Ramla. From Hershkovitz et al. 2021 htt
Looking at the morphology of the mandible NR-2, it falls within the variation of fossils attributed to Neandertals, and is similar to Krapina, which is around the same age, and Sima, which are early Neandertals. This seems like a basic early Neandertal jaw. PC plot showing position of Nesher Ramla 2 next to Neanderta
The other fossil NR-1 is a complete right parietal bone and fragments of the left parietal. The analysis of shape places is near late Neandertals and early Neandertals, but a bit less "barrel-shaped", thereby similar to generalized H. erectus and African Middle Pleistocene Homo. PC plot of Nesher Ramla 1 parietal bone showing its position
Read 11 tweets
23 Jun 21
Today, I'm reflecting on how this reporter was betrayed by her @nytimes editors. The reporting turned up so many newsworthy ledes, and instead they let it tailspin into a tuna Zoomer fluff story that spreads basic science misinformation. nytimes.com/2021/06/19/sty…
@nytimes For instance, "a handful" of commercial food testing labs refused to take the @nytimes samples. They all said (accurately!!) that the technology wouldn't give an answer. Why is this not the lede in a story that is really about the challenges in sourcing food ingredients?
@nytimes We have just gone through a year in which PCR testing has been a major news story. Understanding what it is, its strengths and limits, why it was so hard to get right, is pretty important. COVID testing brought down a President. So why does this story fumble PCR so badly?
Read 8 tweets
19 May 21
Classic paper: "Biology and Body Size in Human Evolution: Statistical Inference Misapplied" Richard Smith (1996, Current Anthropology) works through examples to show how mistaken ideas about extinct species can arise through estimation of body mass. doi.org/10.1086/204505
"[A]s of today, many inferences about fossil hominids are being made on the basis of body mass alone, and the range of uncertainty is being mostly ignored." This problem remains 25 years later.
"Finally it must be reemphasized that all of this discussion does not apply only to body mass. With the growing interest in life-history, the potential misuse of traits such as molar eruption age, sex dimorphism, and cranial capacity is clearly on the horizon."
Read 4 tweets

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