We developed Visualization in Plugin on top of #cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format for #singlecell #rnaseq dataset #scRNAseq #scanpy 
The preprint is available here
@cellxgene VIP unleashes full power of interactive visualization, plotting and analysis of #scRNA-seq data in the scale of millions of cells biorxiv.org/content/10.110…
@cellxgene VIP unleashes full power of interactive visualization, plotting and analysis of #scRNA-seq data in the scale of millions of cells biorxiv.org/content/10.110…
Want to play with cellxgene VIP live? Demo is here
cellxgenevip-ms.bxgenomics.com
Dataset: MS brain #snRNAseq dataset by @schirmerlab and #RowitchLab
cellxgenevip-ms.bxgenomics.com
Dataset: MS brain #snRNAseq dataset by @schirmerlab and #RowitchLab
Interested in trying it out @10xGenomics #singlecell #RNAsequencing data yourself? Source code available here
github.com/interactiverep…
A single command installation guide is available
github.com/interactiverep…
A single command installation guide is available
A Command Line Interface (CLI) is provided to offer unlimited analytical potentials by calling any Python (Scanpy) and/or R packages such as Seurat (sample vignettes in GitHub) installed on the server directly through a mini Jupyter notebook environment. @fabian_theis @satijalab
