Prof. Shane Crotty Profile picture
Jun 1, 2021 18 tweets 6 min read Read on X
A thread on current understanding of natural immunity to SARS-CoV-2 🧵
Immunity to SARS-CoV-2 is a key issue for global society. Natural immunity to SARS-CoV-2 (obtained by infection) and vaccine-generated immunity to SARS-CoV-2 are two different paths to immunity.
Based on our team’s SARS2 immune memory measurements (memory T and B cells & antibodies) we predicted natural immunity against serious cases of SARS2 reinfection would last multiple years in most people, against the original SARS2 strain. Back in Nov-Jan.

science.sciencemag.org/content/371/65…
It looked like natural immunity wasn't perfect, but it was probably good and was likely to last a long time for protection against serious COVID, for the original strain.

Our summary of that paper is in the linked thread.
What have we learned since January?
In brief:
🔵 Antibodies are present for over a year
🔵 Immune memory begins to stabilize by six months
🔵 Memory B cells possess a diversity of specificities against SARS2 variants
Luckily, pro @apoorva_nyc wrote on this!  (and wrote better and got great quotes from @TheBcellArtist @NussenzweigL @JenGommerman @SCOTTeHENSLEY @PepperMarion!). Read her excellent article.
My brief summary of all of these updates since the beginning of 2021 is below.
1st: Antibodies are present for over a year post-infection. Several studies, include one with >95% antibody positive.

dx.doi.org/10.1101/2021.0…
dx.doi.org/10.1101/2021.0…
And a beautiful study by Ali Ellebedy @TheBcellArtist provides a clear mechanism for the longevity of the antibody responses, as long-lived plasma cells are detected in patients.
dx.doi.org/10.1038/s41586…
2nd: Ahmed and McElrath have an outstanding study of longitudinal memory kinetics, showing stabilization over time.

3rd: Memory B cells possess a diversity of specificities against SARS2 variants.
Your immune system is highly evolved to deal with variants. Memory B cells are part of that.
People who have had COVID don’t have great antibodies against the variants with the most antibody escape (e.g. B.1351, P.1). That is definitely a hole in the natural immunity armor.
Memory B cells are quiescent and have two major functions. One is to produce identical antibodies upon reinfection with the same virus. The second function is that memory B cells encode a library of antibody mutations—immunological variants.
These diverse memory B cells, created in response to infection, look to be pre-emptive guesses by the immune system as to what variants may emerge in the future. This brilliant evolutionary strategy is observed clearly for SARS-CoV-2 with antibodies from human memory B cells.
This outstanding study from @NussenzweigL shows this well.  A substantial frequency of memory B cells encode antibodies capable of binding or neutralizing VOCs. And the quality of those memory B cells increases over time.
dx.doi.org/10.1101/2021.0… Image
Also, the dramatic increase in variant-neutralizing antibodies after vaccination of previously SARS-CoV-2—infected persons reflects recall of diverse + high quality memory B cells generated after the original infection. The Wherry lab study supports this.
All of that immune memory data above, after SARS2 infections, is consistent with a range of observational cohort studies that have reported natural immunity against symptomatic infection (COVID-19) to be 93-100% over 7-8 months.

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More from @profshanecrotty

Oct 4, 2022
Our new paper is out showing T cell responses to the Novavax vaccine, studying Novavax vaccine clinical trial participants, led by the outstanding Dr. @CModerbacher! With a nice commentary article by @PC_immuno . 🧵

jci.org/articles/view/…

jci.org/articles/view/…
This complements our immune memory study comparing 4 COVID vaccines, including Novavax.
Including direct CD4 and CD8 T cell memory comparisons

sciencedirect.com/science/articl…
Read 4 tweets
Sep 26, 2022
Our paper on immunization and long germinal centers is out in @Nature! Congrats to the indefatigable and brilliant JH Lee and @harrysutton93 ! 🧵
nature.com/articles/s4158…

And Free link: rdcu.be/cV2xv
We put together an extensive tweetorial of this study earlier:
And a deep dive into some of the cool immunological questions the experiments shed light on:
Read 6 tweets
Aug 31, 2022
The brand newly approved COVID boosters are going to work well. They won’t be a game changer—won’t prevent all infections—but are the best booster option and will provide a lot of protection.

It’s the immunity you want heading into the Fall and winter.

nytimes.com/2022/08/31/wel…
To clarify a few things and add some details:

The Omicron booster vaxs are clearly safe. Billions of Covid mRNA vax doses have been given, with excellent safety. Regarding the new “bivalent” boosters, there was a 2021 bivalent COVID booster vax human trial…
and it was safe and boosted immunity well. nature.com/articles/s4159…
Read 9 tweets
Jul 28, 2022
Wonderful workshop on Vaccine Durability questions today and yesterday with NIAID. Thanks to my session co-chair @TheBcellArtist, and the awesome panelists. There was intensive and wonderful discussion, and we did make several recommendations 👇🏼
The awesome panelists were @deeptabhattacha @KingLabIPD, Rama Amara, Kanta Subbarao, and Chris Chiu (are they on Twitter?)

The rapid fire recommendations at the end of the discussion:
What kind of studies that would bring us closer to addressing some of the knowledge gaps in engineering durable vaccine immune responses?
Read 10 tweets
Jul 19, 2022
It is good to see Novavax antibody data on Omicron 1,2,4 and 5 from @veeslerlab out. science.org/doi/10.1126/sc…
We provided the 2x Novavax immunized donor samples, which we extensively compared to mRNA and J&J vaccines for immune memory antibodies, CD4 T cells, CD8 T cells, and memory B cells in a recent paper sciencedirect.com/science/articl…
And it is good to see a new preprint from Penny Moore and colleagues with similar Novavax Omicron data.
Read 4 tweets
Mar 31, 2022
What parts of the immune system are protecting you against COVID? Immunology is complicated, so here's a graphic to try and explain it.
Layered defenses against SARS-CoV-2, or the “Swiss cheese” model of immunity. Image
Multiple types of adaptive immunity with diverse mechanisms likely provide layers of defense against COVID-19. Conceptually, these are like a “Swiss cheese model”: even though each layer is imperfect, together they keep the pathogen from breaching all layers of defense.
The graphic was inspired by the fantastic masking and public health layered defenses Swiss cheese model of @MackayIM.
Read 8 tweets

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