For those not working in epidemiology:

Omicron isn't Pac Man

It's not chasing down the few with no past infection or vaccination

Most have been infected or vaccinated in South Africa and worldwide

To spread this fast, this variant has been infecting those with some immunity
This changes how we quantify its risk.
It is a bit of the tortoise and the hare.

Variants that quickly infect in naive populations are like the hare. High R0

Variants that keep chugging along despite immunity may be the tortoise. High Immune Escape

Tortoise can win in the end
A bit of terminology
R0: # 2ndary infections per initial infection in a naive population
Intrinsic R0 no longer alone determines spread as the world is no longer naive to COVID

Rt or Reffective describes 2ndary infections in real time in an outbreak w/immunity, behavior change
R values always depend on context

Simple quantification is
R = beta*c*d
beta - transmission probability per contact
c - # contacts per day
d - duration of infectivity in days

R depends on network of contacts, reductions in beta, c, d (eg masking, vaccines, immunity, distancing)
From @trvrb, the best way to understand this difference is that when most immune, intrinsic R0 transmissibility and immune escape together determine spread.
Omicron, with higher immune escape (specifics still being updated) may have a much higher Rt in this immune population

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More from @InfectiousDz

29 Sep
In August, an 80 year old man woke up to find a bat on his neck. Bat tested positive for rabies. The man reportedly refused the vaccine. He died of rabies. First death in Illinois from rabies since 1954.
dph.illinois.gov/news/illinois-…
So far this year, 30 bats have tested positive for rabies in Illinois. More than 1,000 bats are tested for rabies each year in Illinois due to a possible exposure. Approximately 3% of tested bats are positive for rabies.
So what is post-exposure prophylaxis for rabies?
- Clean wound with soap and water (or povidine-iodine)
- Immunoglobulin if never vaccinated for rabies
- 4 doses (immediately, then days 3, 7, 14) Image
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2 Sep
Which countries are rolling out 3rd vaccine shots?
Israel offering 3rd doses currently to all vaccinated 12+
reuters.com/world/middle-e…
Starting in September, Germany will offer another dose of Pfizer or Moderna to older people, residents of care homes, and people with compromised immune systems — and also to anyone who was already fully vaccinated with the 2-dose AZ or single-dose J&J
nytimes.com/2021/08/02/wor…
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1 Sep
HIV made the news because yet another vaccine failed. The real story is the impact of COVID on HIV and in turn on COVID. Roll out of a new med worldwide, dolutegravir, delayed. Many missed appointments, refills, doses. Others weren't diagnosed.
This impacts not just HIV but COVID
The cascade of HIV care - learning diagnosis, starting treatment, returning for appointments and viral load testing, adherence, HIV viral suppression - has had interruptions over the past 1.5 years worldwide.
Worldwide we have seen drop offs in service delivery along this cascade of care.
theglobalfight.org/covid-aids-tb-…
This means people are missing their diagnosis, their meds, their control of the virus, and the chance to be healthy and also non-infectious
Read 13 tweets
26 Aug
There are always minor anomalies created by how data is collected and reported.

and then there's whatever happened on August 23rd in Uganda's case count reporting by JHU, FT, and Our World in Data
This did not reflect what Uganda's MOH reported on the 23rd, but there can always be a backlog of cases being identified and reported.
This is important, not just for Uganda, which was hit early by Delta, but also in best preparing for Delta in nearby countries, as the variant has been more recently forming surges elsewhere in East Africa.
Read 4 tweets
25 Aug
Here's the start of a list of tweets announcing new vaccine mandates.
France - digital pass, vaccine or test for cafes, restaurants, museums etc foreignpolicy.com/2021/07/27/fra…
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Read 51 tweets
25 Aug
Oklahoma, this is bad.

Case positivity - 81.98%
Standing far above another other US state. 1/4 Image
Oklahoma - leading the nation in searches for ivermectin. Image
Case positivity has reached this high even with a rise in testing. Image
Read 12 tweets

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