Shabir Madhi Profile picture
Apr 23 13 tweets 3 min read
South Africa on cusp of resurgence, after the high infection rate with Omicron- albeit massive decoupling of infections and severe disease materialising. Current resurgence likely due to sub-lineage of Omicron- BA4. What can we expect, now that >80% population have some immunity
Most of immunity in SA unfortunately resulted from infection (>80% infected since start of pandemic). In addition ~40% received at lease single dose Covid vaccine. Evidence indicates hybrid immunity protects as well as vaccine only induced immunity (rare in SA), if not better
In addition, infection only induced immunity shown to be more protective than 2 dose Pfizer only induced immunIty in Qatari study. That is not to say people should go out to be infected - as that comes at cost of suffering and loss of life/ which is NOT the case with vaccines.
Nevertheless, cannot dismiss impact infection induced immunity, that inadvertently evolved in SA despite restrictions, will have on trajectory of pandemic. Infection induced immunity induced depth of T cell responses that protect against severe disease even against variants
?expectations with BA4 ( and perhaps some other variant which evolves). Likely will experience many infections, more so in people not infected during omicron wave, but also some reinfections after Omicron if occurred sometime ago. Infections least likely if have hybrid immunity.
Can we prevent infections? Yes , if using right type mask (N95 type) and wearing it correctly, avoiding indoor poorly ventilated spaces. Needs to be considered for anyone at high risk of Covid- irrespective of vaccinated. But, little potential impact on resurgence in SA context
As was “successfully” done for Omicron wave in SA, when restrictions were pretty much abandoned, there was no overwhelming of health services as Omicron wave accounted for 5% of Covid deaths since start of pandemic - >90% in unvaccinated. With BA4, will likely be more decoupling
Health care facilities should, however, be prepared. The focus in SA context, unlike countries able to truly minimise infections en masse, is about minimising severe disease . Ongoing effort required to get beyond the 65% of older than 50 vaccinated to at least 90%.
Need to be cautious, but no need to panic as we live with the virus. Any pretence that we achieve much with regulations aimed at preventing infections is dismissive of what transpired in SA, and agnostic to the detrimental impact on SA which disproportionately affected the poor
Infections do result in risk of long Covid - although most data from when people were infected prior to developing immunity. Vaccine induced immunity reduce risk of long Covid, and expect the same with infection induced immunity. Viz. risk of long covid lower now in SA after Ix
Need to also start getting excess to Pfizer anti- viral, to help protect high risk groups after infection. Unfortunately, appears to be on same course as vaccines - unacceptable delayed access in low and middle income countries, while doses are hoarded in high income countries
Always, although unlikely, that new variant could evade T cell immunity that protects against severe Covid. In the unlikelihood of that occurring, we back at square one - as would make current immunity largely obsolete, taking us back to March 2020. Can rename Covid to Covid -22

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More from @ShabirMadh

Feb 24
Confirmation of early observations from Gauteng (home to 25% South Africans; n=15.5 million) of impressive decoupling of SARS-CoV-2 infections and severe/fatal Covid during course of Omicron relative to earlier waves published by Wits-VIDA in NEJM today. nejm.org/doi/full/10.10…
Study report on population based sero-survey across age-groups pre onset of Omicron wave, and incidence of recorded Covid cases, hospitalization and death, and excess mortality attributable Covid death estimate from the start of the pandemic until tail end of the Omicron wave
Sero-survey identified: i. Sero-positivity 56% in age <12 yr and 80% in >50 yr; ii. 85% sero-positive in high density inner city; iii. sero-positivity 68% in unvaccinated and 93% in vaccinated. Imputed 10.4 million infections vs. <1 million recorded Covid cases pre-omicron.
Read 15 tweets
Jan 12
Latest excess mortality, with 1 week delay relative recorded deaths. Both on downward trajectory . Since start of pandemic, approx 50% Covid deaths occurred during delta wave and under 5% during omicron wave . Decoupling has taken place, with -73% population immunity
In SA, Covid attributable morality rate is 480 per 100,000 ( higher than any high income country), immunity mainly due to high force past infection in 1st 3 waves, with only 15% population having received 2 doses of Covid vaccine. SA does NOT have a low risk population.
Any suggestion that HIC with high vaccine coverage would not see same decoupling of infections vs death and severe disease, would seriously call into question vaccines - which all the Data shows protects against severe disease from Omicron. Vaccines do work irrespective of where.
Read 8 tweets
Dec 31, 2021
No better way to start 2022 than revel in earlier optimism of being in a new phase of pandemic. Further variants always a likelihood, however, Omicron in SA hopefully a prelude to what to expect moving ahead- death rate only 13% compared to delta wave.
Case rate peaked at slightly lower than for delta wave, despite SA not going to higher levels of restrictions as it did in the past when there was an increase in cars. Also, total recorded cases lower than for delta wave, albeit possible differences in testing rate.
?omicron less virulent. Based on SA and UK.- 2 dose Pfizer does not protect against mild Omicron. Pfizer x2 (and JJ x2) reduces risk of severe Covid by 70%.Then there is natural immunity- does not do much against reinfection, but likely important driver for Omicron trend in SA
Read 8 tweets
Dec 29, 2021
@HealthZA an astounding U turning doing away with quarantine and contact tracing, Can only marvel how NDoH once again clutches defeat from the jaws of victory! The reasons why contact tracing and quarantine are futile in the SA context has been detailed dailymaverick.co.za/article/2021-1…
Bottom line, it might have served some purpose in the distant past, and probably still has a role to play where majority of cases are diagnosed. This is NOT the case in SA where we identify less than 10% of infections based on reported cases and serosurvey data.
The now withdrawn circular from NDoH certainly muddled up the issue of isolation, although the quarantine and contact tracing appeared to have aligned with what the MAC and others had proposed. SA does not have the luxury of enduring ongoing poor decision making by NDoH
Read 7 tweets
Dec 25, 2021
After much scepticism of SA data, indicative of “unless we say so”, appears that scientists and Governments from high income countries have come around that Omicron causes less severe illness, despite being the most antibody evasive variant. Experience seems to be tracking SA.
Reason for less severe disease probably underlying cell mediated immunity induced by vaccines and more diversely so by natural infection. Despite greater infectiousness and transmissibility, Omicron more adapt in replicating in upper airway could contribute to milder illness
Gauteng, original omicron epicentre on steep downward trend, as rapid as was the increase. Recorded death rate crept marginally up and probably for another week, but less than 10th of peak of previous variants and at interweave rate. Image credit Jonny Myers
Read 9 tweets
Dec 17, 2021
One week later and heading into week 5 of Omicron wave in Gauteng SA and outlook remains positive for what matters most - relatively low rates of severe disease and death. Many other provinces now also showing rapid rate of increase, however in Gauteng:
1. Wave of Covid cases has peaked and on a downward trajectory already. Peaked 4 weeks after onset , compared with peaking at 8 weeks after onset in previous 2 waves. Has peaked at same positivity rate of 38%, but at lower case rate per 100000 than delta.
2 Hospitalisation rate in Gauteng seemingly plateaued at one third of where delta peaked, although cases in hospital include coincidental infection. May explain shorter stay ( 3.5 d) than before (8d). Unclear if mainly causing bronchitis vs LRTI ( re lab experiment)
Read 6 tweets

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