John Butler Profile picture
Jul 7, 2022 24 tweets 31 min read Read on X
.@neuromatch summary sheet w/out Python for the Pre-Reqs Refresher Algebra day.
The full excellent tutorial w Python by @EllaBatty gives an intuitive understanding of the algebra needed for CN and DL summer schools
compneuro.neuromatch.io/tutorials/W0D3… Image
.@neuromatch summary sheet w/out Python for the Pre-Reqs Refresher Calculus day.
compneuro.neuromatch.io/tutorials/W0D4… ImageImage
.@neuromatch summary sheet of the Pre-Reqs Refresher Statistics tutorial by @UlrikBeierholm
compneuro.neuromatch.io/tutorials/W0D5… ImageImage
@neuromatch @UlrikBeierholm .@neuromatch summary sheet for the first official day of the summer school.
It is a lovely introduction to how to think about Model Types by @GunnarBlohm @KordingLab and Matt Laporte
compneuro.neuromatch.io/tutorials/W1D1… ImageImageImage
Summary sheets for the @neuromatch Model Fitting tutorial (W1D2).
Fitting the "right" model is not simple or straightforward but tutorial by Pierre-Étienne Fiquet, @anqiwu_angela @AlexHyafil gives a very sold grounding of where to start
compneuro.neuromatch.io/tutorials/W1D2… ImageImage
I was a bit minimal on the Generalised Linear Model (W1D3) @neuromatch summary sheet but the tutorials by Cristina Savin, Pierre-Etienne Fiquet, @arisbenjamin @jakhmack have loads of more materials.
I'm also retweeting the musical pairing👇as I like it 😃
compneuro.neuromatch.io/tutorials/W1D3… Image
I've reduced the @neuromatch Dimensionality Reduction by @YuLikeNeuro Alex Cayco Gajic, & @johndmurray to a two page Summary Sheet
compneuro.neuromatch.io/tutorials/W1D4… ImageImage
Here are the Summary Sheets for @neuromatch Deep Learning tutorial by Aude Olivia, Jorge A. Menendez,
@computingnature and @Yalda_Mhz
Neural Networks are coming full circle they were informed by neuroscience and have been a great analysis tool but now..
compneuro.neuromatch.io/tutorials/W1D5… ImageImage
Summary sheets for Week 2 Day 2 of @neuromatch starts with 10 steps of good Model Practices by @BMtHart @meganakpeters @schrater_paul @GunnarBlohm
The advice in this tutorial (and paper👇) is fundamental when starting any model/experiment/study/paper. 1/3
compneuro.neuromatch.io/tutorials/W2D1… ImageImageImageImage
Summary sheets for @neuromatch Linear Systems by Eric Shea-Brown, @bingbrunton & Ellie Stradquist.
This is my favourite day an intuitive introduction to the power of linear systems and differential equations
compneuro.neuromatch.io/tutorials/W2D2… ImageImageImageImage
.@neuromatch Summary Sheets of the Biological Neuron Models tutorial by Upi Bhalla, @qinglong_gu, Songtin Li, @johndmurray, @NeuroNaud, @arvin_neuro & @YiotaPoirazi
compneuro.neuromatch.io/tutorials/W2D3… ImageImageImageImage
.@neuromatch Summary Sheets for Dynamic Networks by Nicolas Brunel, @qinglong_gu, Songtin Li, @arvin_neuro, @johndmurray, @GjorJulijana
& Ken Miller
Like last year I'll pair the Wilson-Cowan model with "Don't Give Up" Peter Gabriel & Kate Bush as they are both beautiful duets 1/ ImageImageImage
Also like Kate Bush, Systems of Differential Equations are cool and always will be cool. 2/2
The @neuromatch Summary Sheets for how to fish using Bayesian Decisions by @schrater_paul @NeuroChooser @xaqlab @EllaBatty and Saeed Salehi
compneuro.neuromatch.io/tutorials/W3D1…
1/2 ImageImageImageImage
Prior knowledge of the fish location can really help and that is Bayes in a nutshell. 2/2
ImageImage
Summary Sheets for @neuromatch Hidden Dynamics (W3D2) tutorial by @seanescola, Yicheng Fei, @xaqlab,
@JesseLivezey & Itzel Olivos Castillo
This day covers a massive amount from Drift Diffusion to Kalman Filters with a bit of Markov in the middle 1/2
compneuro.neuromatch.io/tutorials/W3D2… ImageImageImageImage
Early this year I gave a talk in a pub about the parameters of a Drift Diffusion using the analogy of deciding if I will have another pint.
So pretty much that same content as the first tutorial of the #nma Hidden Dynamics day 2/2
Summary Sheets for Optimal Control (W3D3) by Maurice Smith, Zhengwei Wu, @shreyaneuroctrl, @xaqlab & Reza Shadmehr
This is a big one going from Discrete to Continuous
compneuro.neuromatch.io/tutorials/W3D3…
1/2 ImageImageImageImage
Summary Sheets for @neuromatch Reinforcement Learning (W3D4) tutorial by Doina Precup, @marcelomattar, @NeuroChooser, @prokraustinator, @bgalbraith & @behrenstimb
It would be great if could all learn from our environment but sadly ... 1/2
compneuro.neuromatch.io/tutorials/W3D4… ImageImageImageImage
some of us are a bit more like the kids in Charlie and Chocolate Factory and are doomed to repeat the same mistakes again and again until we get sucked up a giant pipe :) 2/2
ImageImageImage
The last @neuromatch Summary Sheets for the Network Causality (W3D5) by Sofia Triantafyllou, Ari Benjamin, Tony Liu @KordingLab & Rob Kass
With these techniques you can answer questions like did three weeks of Neuromatch make me tired or...
1/2
compneuro.neuromatch.io/tutorials/W3D5… ImageImageImageImage
is it a coincidence and I was always tired :)

2/2 ImageImage

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More from @jslbutler

Aug 3, 2022
The @neuromatch concept maps and summary sheets were written in LaTeX using @overleaf all links to the open code👇
If you use the materials please cite:
t'Hart et al 2022 Neuromatch Academy: a 3-week, online summer school in computational neuroscience 1/7
jose.theoj.org/papers/10.2110… ImageImageImageImage
Latex Code for the Neuromatch Pre-Requisite Summary 2/7
github.com/john-s-butler-…
Latex Code for the Neuromatch Intro to Modeling Summary Sheets 3/7
github.com/john-s-butler-…
Read 7 tweets
Aug 3, 2021
Here is my full playlist for @neuromatch Deep Learning.
My song for Basics And Pytorch (W1D1) by Shubh Pachchigar, @haltakov , Matthew Sargent, @KordingLab is
“Rolling in the Deep” by Adele
1/16
My song choice for Linear Deep Learning (W1D2) by Saeed Salehi, @haltakov & @SaxeLab is
River Deep Mountain High by Ike & Tina Turner
because
"And the ML gets stronger in every way
And it gets deeper, deeper, deeper, let me say" 2/16
My song choice for Multi Layer Perceptrons (W1D3) by @Arash2ML, @SuryaGanguli is
"How deep is your Love" by Take That
because we need to know,
"How deep is your Layer"

3/16
Read 17 tweets
Jun 27, 2021
@neuromatch starts tomorrow with a Python refresher.
I’m going to give a musical pairing for each day.
For W0D1 my suggestion is Holst: The Planets.
In particular, Jupyter: the Bringer of Joy.
Best of luck to all the students and TAs I hope it brings joy
open.spotify.com/album/4v0Xyz0L…
@neuromatch My W0D3 @neuromatch musical pairing for @EllaBatty Linear Algebra is the excellent Tron Legacy Soundtrack.
The connection is in Tron they use vectors, matrices and rotations to visualise a digital world.
Similar visualisation are useful for motor control😀
open.spotify.com/album/3AMXFnwH…
My W0D4 @neuromatch musical pairing for
@arvin_neuro @EllaBatty and me tutorials on Calculus is My Favourite Things as they are some of my favourite things.
For Tutorial 1 on Differentiation and Integration I recommend the classic Julie Andrews version /1
open.spotify.com/track/1iCHl2R7…
Read 36 tweets

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