Raj Mehta Profile picture
Jul 29 15 tweets 5 min read
1/ Thread on Analyzing Physician Thought Processes with Conditional Probability

One important aspect of #EBM is to help physicians calibrate their probabilistic reasoning and improve their clinical judgement.

We will walk through one example from study highlighted below.
2/ The Study:

The basis of this thread is this interesting paper on physician probability estimates of medical outcomes:

jamanetwork.com/journals/jaman…
3/ Key concepts:

Difference between Independent vs dependent events
en.wikipedia.org/wiki/Independe…

Conditional Probability
en.wikipedia.org/wiki/Condition…

Summary of Probabilities (picture)
4/ Case Scenario:

We are presented with a patient with a pulmonary nodule.

Assuming our first decision point is deciding between surveillance or biopsy, we need to start by estimating the probability of cancer.
5/ Reading a Case:

When Docs read:
"What is the probability that a Patient with B,C,D... has cancer?"

We interpret "B,C,D" in the past tense as GIVEN information.

Thus, we estimate chance of cancer GIVEN age, smoking history, 2.5 cm nodule, etc
6/ Estimating Probability of Cancer:

Using a Risk Tool, we get risk ~ 80%

This is consistent with most surveyed physicians from the study (Component 1 below, majority >75%).

It suggests physician judgement is pretty good at incorporating conditional probability in estimation!
7/ A tricky question:

How do we interpret the question in Frame 1 below?

"What is the overall combined probability that (1)... and (2)... ?"

(1) the patient has malignancy
(2) a technically successful transthoracic needle biopsy will reveal malignancy on pathological exam
8/ How different are the following examples?

1. "What is the overall combined probability that the patient with malignancy has a biopsy that will reveal cancer"

2. "What is the overall combined probability that the patient has malignancy and a biopsy will reveal cancer"
9/ When we ask physicians to "combine probabilities", what is their cognitive process?

The authors intended to ask:
"what is joint probability that (1) & (2) occur independently?"

But the question could also be read as:
"what is the probability of (2) given (1)?"
10/ The ambiguity of the question in Frame 1 is a major limitation to this study.

The high rate of physician "fallacy" may just be due to differing interpretations of the case question, rather than any failure in multi-step (or conditional) probability estimation.
11/ The paper does highlight an important aspect of physician judgement that is an area for improvement:

Improving calibration of our estimates

Take the example below. Although most surveyed docs (component 1) estimated a high risk of cancer, a minority did not (~ 7 dots <50%)
12/ Many of those physicians might correctly think that cancer is the most likely diagnosis (we are good at discriminating signs/symptoms/data to determine the most likely outcome).

But experience does not always help us calibrate the most accurate probability estimates.
13/ EBM serves as an important tool, because physicians can compare the cognitive probability estimates against validated evidence (epidemiologic data, risk tools, etc).

This can help us refine and improve the areas where our estimates are inaccurate.
14/ The cognitive process in physician judgement involves a complex array of conditional probability estimates. Modeling these steps can be tricky.

Most physicians likely do a reasonably good job, but even best expert can still find opportunities for improvement.

/End
Addendum:

Good paper on some limits of using probability to model cognitive process, & how subjective uncertainty and surprise helps us to learn from event outcomes.

frontiersin.org/articles/10.33…

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More from @raj_mehta

Sep 13, 2021
1/ Tweetorial on Stratification bias (or Collider-Stratification bias)

This is something that comes up often in Obs studies. To quote @Lester_Domes:

"It has long been known that stratifying on variables affected by the study exposure can create selection bias"
2/ Selection bias is a common problem in Observational Research.

Improper stratification can inadvertently cause selection bias. The paper below is an excellent introduction to this topic.

journals.lww.com/epidem/Fulltex…
3/ For a more recent and straightforward example, Im going to look at the recent pre-print by @drjohnm on covid myocarditis.

Read 14 tweets
Apr 18, 2021
1/ A thread on discussing airborne transmission of respiratory diseases

or

How the droplet vs airborne debate is deceptively about not one, not two, but *three* different dichotomies.

(warning: this thread is really long. sorry!)
2/ This thread was inspired in part from great discussions after the tweet below.

Many agree that dichotomizing the droplet/aerosol is wrong, but ignore dichotomizing of:

-> infectiousness of respiratory pathogens
&
-> effect size of infection control

3/ Though the consensus now recognizes the role of aerosols in covid19, we still need look closer at all 3 dichotomies to understand the flaws in the classical model/framework of respiratory pathogen transmission (as described in the link below).

academic.oup.com/cid/advance-ar…
Read 24 tweets
Apr 16, 2021
1/ A brief thread on how I think about diagnostic reasoning & measurement error

Or

How regression to the mean and confounding bias leads docs to over-estimate both the probability of disease & effectiveness of interventions.

2/
True findings - absence or presence of abnormalities *due to disease* that can effect outcomes.

Observed findings - signs, symptoms, lab results, radiology, etc.

Diagnosis/Intervention - based on observed findings

Outcomes - effected by true findings & interventions Image
3/
Most diseases result in abnormalities that negatively effect health outcomes.

When we observe findings, we are unsure if they are truly *due to a disease* in our differential diagnosis.

We have to consider if the observed findings are subject to measurement error. Image
Read 14 tweets
Mar 11, 2021
1/ The success of the UK Recovery trials both inspires and frustrates.

Inspirational in it's achievement, but frustrating when I compare it to efforts the US.

Why has the US has not been able to replicate similar research for therapeutic agents?

2/ Convalescent plasma (CP) is the best example of the all too common US failure.

First a question. The UK Recovery Trial had to enroll 11k patients before they found futility.

Meanwhile, how many hospitalized patients in the US received CP without being enrolled in any RCTs?
3/ The answer is over 500k hospitalized patients. 500k patients, over *fifty* times the number needed to see if CP actually works.

Needless to say ... this is not good
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Jun 24, 2020
1/ Tweetorial at use of Race/Ethnicity in prediction models, specifically looking at eGFR based on CKD-EPI formula.

eGFR = estimated GFR

ckdepi.org
2/ First some background.

GFR can be directly measured, traditionally by measuring iothalamate clearance. This is process is time consuming, costly, and rather inconvenient. So for greater ease, we attempt to estimate GFR (eGFR) based on serum measurements of Creatinine.
3/ Prediction Models:
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Read 22 tweets
May 24, 2020
1/ Tweetorial on Decision making and Evidence Based Medicine

Or

Integrating Bayesian Inference, Utility, and Uncertainty to optimize rational Medical Decisions.
2/ General disclaimer, this is more of a proposal on how to *add* decision making into our existing EBM framework.

Feedback is welcome, and this is hopefully an evolving field thanks to @RichardLehman1 and others!
3/ Approaches to Medical decision making borrows from the broader field of decision theory.

The predominant framework (Statistical/Bayesian) integrates bayesian inference, utility, & uncertainty into a process to optimize rational decisions.
Read 15 tweets

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