Excited to share this preprint, with student @niwhskal : arxiv.org/abs/2207.14729. Genotypes mostly do not code directly for phenotypes, ok. But what implications for evolution of the *competency* of cells, within the developmental physiology that forms the “hidden layers” between
genome+environment (input) and form+function (output)? We analyzed minimal simulations of evolution of virtual embryos where cells have different levels of local autonomy prior to fitness evaluation (like reviewed in mdpi.com/1099-4300/24/6…). Lots of interesting aspects, but key
is: the more cellular competency, the less well evolution can see the genome, which reduces ability to select good genotypes – vicious cycle. What happens then? Most of the effort goes into increasing the competency. A sort of evolutionary ratchet for #BasalIntelligence. Also, an
explanation for planaria – the animal with the best anatomical control but a really chaotic genome, and unlike every other model species, no available mutant strains with altered morphologies (except our 2-head line (sciencedirect.com/science/articl…), which is of course not genetically
induced). I think these simulations show what may have happened there – the intelligence ratchet went really strongly, and evolution put most of the work into optimizing the algorithm that enables reliable morphogenesis despite highly variable genetic inputs. More on this coming.
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New paper @pai_vaibhav: onlinelibrary.wiley.com/doi/10.1111/wr…#bioelectric repair of eye, heart, and gut defects from a range of chemical teratogens and even from mutations of a key neurogenesis gene Notch! Molecular or drug (human-approved) methods repair defects in multiple germ layers. 🧵:
Super excited about this; here's context of how we got here via Pai's prior papers, & ties of this biomed-focused project to basal cognition field. Regulative development or regeneration needs to be able to ascertain correct vs. incorrect morphologies. How could cell groups do
that? Model nature.com/articles/s4159… but basically, think of image recognition by visual systems - can other body tissues act like retinas to process bioelectric info? We originally looked at the voltage prepatterns in the nascent frog brain and saw that teratogens screw up brain
Loving this old paper by H. J. Carter: tandfonline.com/doi/abs/10.108… on the behavior of various microbiota. 1) Tons of vocabulary words here that I don’t know. 2) When I said out loud that it was from 1860’s, my kid said “Let me guess, it just finally got published now?”. Someone 1/n
must have overheard my complaining about how long review takes... 3) Now that journals can be digital and we don’t have to worry about expense of paper printing, can we go back to being able to write in this style: “I have never until lately given the amount of attention 2/n
to it that I have long since done to the other fresh water Rhizopoda, both naked and testaceous. … In the evening of the 2nd of June, 1858, in Bombay, … my eye fell upon….” 3/n
I am floored; not the first time this has happened, blows my mind each time. Contacted by 2 high-school kids who read some of my papers and wanted to talk about the bioelectrics of cancer and the scaling of the self (e.g., frontiersin.org/articles/10.33…). I set up a Zoom. WHOA - 1/n
they had read a bunch of the primary papers, annotated everything to incredible detail with ideas, and asked better questions than I get after most seminars. They had found all the weak points, connected some of the subtle findings with other work in developmental biology, 2/n
re-framed and applied the idea of changing computational boundary of the self during development vs. carcinization, to ask: if anatomical homeostasis can be extended as a kind of cognitive process, as I've claimed, what is beyond that - turn that same conceptual crank 3/n