Dr. Angela Rasmussen Profile picture
Oct 29, 2022 24 tweets 8 min read Read on X
The recent Senate report on COVID origins is overtly political & contains many factual errors.

Some of the most glaring are extremely basic but may not seem so to a non-virologist. As I am a virologist, I can help. Let’s talk about biosafety at WIV.

nytimes.com/2022/10/27/sci…
The report contains a lengthy section regarding biosafety lapses at WIV. It claims to show evidence of multiple biocontainment breaches.

That sounds very bad! But how reliable is this evidence?
help.senate.gov/imo/media/doc/… Image
First thing people need to know about working in biocontainment is that it’s not a “set it and forget it” mentality. You don’t build a containment lab and say, all done, let’s get to cooking up SARSr-CoV chimeras. Biosafety is a constant effort.
I work in one of the largest BSL3 labs in the world. I handle infectious SARS-CoV-2 on a near daily basis. Biosafety & biocontainment is at the front of my mind in everything I do. I have multiple colleagues whose full-time jobs are dedicated to the integrity of our lab.
There are multiple levels where biosafety protocols are implemented: all the way from individual (appropriate PPE & proper training) to the facility design & infrastructure (negative pressure, HEPA filters, waste disposal) to administrative (operational procedures, security).
Part of facility operations include regular maintenance. You make sure air handling is operating normally, the autoclaves are working, etc. Sometimes equipment breaks, so it’s replaced. Sometimes you realize there’s a better alternative, so you upgrade it.
The goal is to conduct essential research as safely as possible and constantly assessing whether that safety standard is met. If you can improve, you do—BEFORE a breach. Biosafety is about avoiding containment failures, not reacting to them.

That’s what I see in this report.
So when I see stuff like this, it seems pretty normal to me. Another key part of facility design is system redundancy. Here, WIV patented an auxiliary exhaust fan to maintain an air pressure gradient. You maintain negative air pressure in labs so pathogens can’t float out. Image
Here, WIV procured a vaporized hydrogen peroxide system to disinfect air coming from the lab. They even explain why they procured it: it’s less corrosive than an alternative. It’s an example of proactively upgrading critical equipment, not evidence of biosafety failure. Image
Same here. They were renovating the HVAC system to ensure lab air was contained in the lab. This is not evidence that any of the things they were explicitly trying to prevent (reversal of airflow, re-circulation of lab air) had ever occurred. Image
Another purchase of air decontamination equipment. Again this is a redundant system: rather than relying on filters alone, they bought a system to sterilize lab exhaust air prior to HEPA filtration. It shows there were multiple processes in place to prevent a containment breach. Image
Here WIV invented a sensor to detect HEPA filter malfunction on equipment used to transfer animals between labs. It improves function of containment measures, which again will be redundant (staff will also wear PPE, & the building itself has all the air handling stuff above). Image
And they invented a new disinfectant formulation. Liquid disinfectant is essential & we use it by the literal bucket. Many labs use Microchem, which is very effective but corrosive over time—it eventually wears out other equipment. Where can I get some less corrosive Microchem? Image
And…that’s it. No evidence of a breach or biosafety failure, but lots of evidence that they were operating a containment lab in a pretty standard way, with one exception: WIV was more innovative than many others and patented some of the bespoke systems they developed.
Which brings me to this. OMG in addition to upgrading and purchasing equipment for lab operations, they were also dealing with budget, procurement, and administrative issues, and as a result they were (gasp) MAKING POLICIES AND DOING BIOSAFETY TRAINING Image
This shows the high cost of maintenance. It’s true that BSL3/4 labs are expensive to operate (see lots of purchases above—infrastructure ain’t cheap). But here they identify this as a potential problem. Fixing problems before they cause a breach is essential to biosafety. Image
And one way to address issues of working with pathogens in substandard biocontainment is to pass laws preventing it and administratively regulate what labs can do certain research. Laws like this one. Image
And they were having a tough time getting equipment, which explains why they were so inventive. They also had meetings to remedy these shortfalls and to manage biosafety more effectively. ImageImage
And November 12, they reported that they solved a lot of these problems! Contrary to the Senate report, as well as a lot of linguistic speculation by the Chinese secrets “expert” profiled in that Vanity Fair/ProPublica piece about it, there is no mention of a biosafety failure. ImageImage
Now I’m not an expert in Chinese secrets or marginalia and I don’t speak Mandarin, but @zhihuachen has a great thread about how this report was actually just bragging to their bosses that aforementioned issues were solved, now let’s get back to safely kicking some virology ass.
I did like this part. I routinely work for 4+ hours in containment. Experiments take time. It’s not “an extreme test of will & physical endurance.” It’s a normal afternoon at work.

Burr may want to consider hardier staff, if they imagine a few hours of pipetting are so taxing. Image
And then WIV also had some biosafety training. Working in containment is “complex and grave” in that you need to be serious about biosafety & ready to respond to failures. That means you need to be properly trained. Training is ongoing & is part of how you prevent breaches. Image
And that’s it! No evidence of a biocontainment breach or a biosafety failure, other than lab leak fan fiction invented by people with no clue about how biosafety actually works reading documents that reflect the daily considerations & challenges of operating a containment lab.
Let’s hope that the bipartisan investigation which Sen. @PattyMurray said is ongoing consults experts who actually understand how operational biosafety works rather than a bunch of political science majors & Chinese secret translators.

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More from @angie_rasmussen

Jun 16
In spring 2020, Craig described NY Presbyterian Hospital to me as “the fucking apocalypse.”

By July, the same sentient pancake stack bragging about his spaceships told me that even though an even bigger surge was hitting sunbelt states, the epi data was “bs” & PCR is fake.
Because I, a virologist with 2 masters & a PhD, ~20 yrs experience with emerging viruses, & whose life at the time was like the forced reeducation scene in Clockwork Orange except with COVID data, was less skillful at interpreting basic epi data than a rich dude with opinions.


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This was a very stupid Twitter fight. It’s subjective who “won”—and certainly there were a lot of fanboys mad that I blasphemed their savior & ruined their fucking Mars colonization fantasies—but the consensus was that Elon was factually incorrect.
independent.co.uk/life-style/elo…
Read 10 tweets
Jun 4
People asking why this is factually incorrect…I’m at a conference today so am pressed for time but I’ll quickly address each of the 5 “key points.”

Bottom line: You can dress up unsupported horseshit in as much polished data viz as you want, but it still stinks.
Yes the virus emerged in Wuhan & the WIV is there & studies SARS-related CoVs, but that’s where the truth ends.

Shi Zhengli’s lab does great work on SARSr-CoVs, but they aren’t the only lab in the world doing so. They aren’t even the only lab in China doing this work. Image
In fact, people all over the world have been studying these viruses—including those isolated from bats—since SARS1 emerged in 2002. In the US, Australia, Hong Kong, Singapore, the UK, the Netherlands, Japan, France, Canada, and so on.
Read 20 tweets
May 23
This is great news, as more testing is urgently needed, but there are some caveats.

Wastewater data can be difficult to interpret. It can be especially difficult to identify the source and won’t catch anything not connected to municipal sewage systems (many farms are not).
Because there is no data indicating widespread human infection, spikes of H5 in wastewater could indicate dumping of infected milk, birds or other animals defecating into sewersheds, etc. Unlike other environmental samples, the host can be very difficult to identify.
Host sequences are completely disentangled in from viral sequences in wastewater, so there’s no way to figure out where a strong H5 signal is coming from with the WW sequences alone. If there’s an obvious source (affected dairy dumping tanks of milk) that might explain a spike.
Read 8 tweets
May 3
Out now on @virological_org: preliminary report on the genomic epidemiology of H5N1 sequences in cattle. This complements the preprint @USDA put out yesterday.

There was a lot of data to work with, so it's split in two parts 👇🏼

virological.org/t/preliminary-…
virological.org/t/preliminary-…
Some key findings from this preliminary analysis:

1. There was a reassortment event shortly before the cattle outbreak.

Only segmented viruses like influenza can reassort. If 2 viruses infect the same host, they can shuffle their genome segments like 2 decks of cards
1. Reassortant viruses can acquire new features, including the ability to replicate efficiently in new host species. In this case, some of the segments were from the high path Eurasian panzootic H5N1 genotypes & some from low path North American genotypes emerging in late 2023. Image
Read 22 tweets
Apr 24
Very important to note here that qPCR positives are not the same as "virus particles." It's much easier to detect viral RNA by qPCR than it is to detect infectious virus or intact virus particles (as the article correctly notes).

This finding does have some big implications:
1. This suggests there are undetected herds shedding virus into the milk supply. Viral RNA does not materialize out of thin air—it is the product of a current or very recent viral infection.

No virus replicating in cows, no viral RNA in milk.

No viral RNA, no PCR positives.
1+. qPCR detects virus by amplifying small specific fragments of the viral genome. There's no indication that they pulled entire H5N1 genome sequences out of this, which would likely require signaling. Influenza is segmented, however, so no word on which segments they amplified.
Read 20 tweets
Apr 5
Here is the article linked above and what it actually says: “The Texas Animal Health Commission said in an email that sick cats tested positive for the virus.”

cidrap.umn.edu/avian-influenz…
“The Texas Animal Health Commission said in an e-Mail that it has received lab confirmation of HPAI in three cats.”  Last I checked, 3 is 37 fewer than 40.
There may be more cats affected but I did not find a single credible report of more than these 3 cats (for now). Also to be clear there is no evidence that it is “spreading rapidly” in mammals & sequence data suggests transmission from birds.

cidrap.umn.edu/avian-influenz…
“She said sequences from the dairy cows nest with those from wild bird samples collected from Texas about the same time. However, the goat samples from Minnesota are most similar to a pheasant sequence from Colorado.  Moncla said none of the PB2 sequences have known adaptive markers, and the similarity of internal genes from wild bird and cattle sequences suggest direct transmission from wild birds.”  The human case did have 1 PB2 mutation that suggested mammalian adaptation—likely adaptation to the human who got it. Cat H5N1 armageddon is not yet upon us.
It’s been known for a long time that H5N1 can infect companion animals—both cats and dogs. We know that it can kill them.

Last summer in Poland there was an outbreak in cats. Mortality was very high but not 100%. Disease was not exclusively neurological.

who.int/emergencies/di…
Read 12 tweets

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