Riccardo Fusaroli Profile picture
Feb 5 9 tweets 4 min read
DAG question for #CausalInference and #epitwitter tweeps: TL;DR: How do we use DAGs in typical pharmacosurveillance scenarios, when the entities of interest are unobserved? A thread 1/
We are interested in whether the administration of a drug is causing an increase in the probability of an adverse event (thus, an adverse drug reaction), vs. there not being any causal relation. 2/
However, the data we have access to are the spontaneous reports of practitioners and patients, about the co-occurrence of drug & event. So, drug & event are unobserved variables, only the report of their co-occurrence is reported. 3/
Note that not all instances of co-occurrence will give rise to a report (people might just not know how to report or not bother to do so). Note that the base rates of drug administration and adverse events do affect the probability of a report of their co-occurrence. 4/
Therefore, we cannot take reports at face value (even if there were no biases in reporting, which ofc is not the case). Therefore, pharmaco-surveillance uses additional information: we have other reports in which the drug and the event appear independently from each other. 5/
The drug can be reported to be associated with other adverse events (event y). The adverse event of interest can be reported to be associated with other drugs (drug y). (for simplicity here all non-focal drug-event associations are represented as causal) 6/
This allows us to calculate a ROR, a reporting odds ratio, i.e. whether the event happens more frequently in presence of the drug, compared to in presence of all the other drugs in the dataset. 7/
This is a complex scenario, beyond the usual 1 outcome 1 exposure, and we are a bit unsure as to whether including the ROR node is the right move. For example, a common bias in the field is the indication bias: both drug and event are caused by the underlying medical condition.8/
In this case, we want to condition on the condition, to make sure the use of the drug increases chances of the event both with the condition and without. However, it’s non-trivial how to derive this from the DAG. Is there lit on these cases that we missed? comments/suggestions?

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More from @fusaroli

Sep 16, 2022
Should we use findings from previous studies and meta-analyses to shape our statistical inferences (aka informed priors)? What are the advantages and issues? Strap on for a loooong thread (link to a video of the talk at the end) 1/
TL;DR - Systematic use of informed studies leads to more precise, but more biased estimates (due to non-linear information flow in the literature). Critically comparison of informed and skeptical priors can provide more nuanced and solid understanding of our findings. 2/
Background: @ShravanVasishth & @bruno_nicenboim invited me to give a talk at their amazing Summer School on Statistical Methods for Linguistics and Psychology (vasishth.github.io/smlp2022/). Go sign up for next year if you can! 3/
Read 37 tweets
Jun 24, 2022
How do we understand each other in conversation? A thread based on my recent IACS4 plenary, covering a critical perspective on interactive linguistic alignment - the tendency to re-use each other's linguistic forms. 1/ Image
TL;DR: by building cumulative scientific approaches & standardised automated tools we can show even basic mechanisms like priming and alignment are shaped by the short- & long-term communicative context. Plus, there's no escaping both qualitative and quantitative approaches. 2/
Problem: social interactions are complex: listening to what your interlocutor is saying & how (prosody, gesture), anticipating where they are going, to plan your turn, its content, timing & delivery, shaping it according to expected reactions, etc. Easy to get overwhelmed. 3/ Image
Read 49 tweets
Dec 29, 2021
How do we build a more explicitly cumulative and yet self-critical scientific approach? In a just published paper (onlinelibrary.wiley.com/doi/10.1002/au…), we provide one of many possible paths.
TL;DR and a thread below 1/
TL;DR: design following systematic review, analyse with meta-analytically informed priors, critically assess and compare with skeptical priors, build and promote open science practices. (freely accessible preprint here: biorxiv.org/content/10.110…) 2/
A few years ago I got interested in how autistic individuals sound "different" - noted already in Asperger's and Kanner's early descriptions -, how this is used in current assessment processes (e.g., ADOS) and how it has been scientifically investigated 3/
Read 17 tweets
Sep 14, 2021
Conversation is a dance, how do we learn? In this systematic review & meta-analysis we thoroughly explore models & evidence for how turn-taking develops and which factors are involved. Comments & suggested pub venues are very welcome. Long thread 1/ psyarxiv.com/3bak6
This was a brilliant student-led project by Vivian Nguyen & Otto Versyp from Ghent University, who spent their Fall 20 on an internship (aka regularly zooming) with me and @ChrisMMCox 2/
Turn taking is a very fascinating phenomenon. @Evol_of_Com & @Sonja_Vernes argue that it might be a cornerstone for animal communication in a very inspiring paper (royalsocietypublishing.org/doi/full/10.10…) 3/
Read 24 tweets
Feb 4, 2021
This thread is making me think critically about ongoing work with @AlbertoParola2 and separately with @ethanweed. After looking meta-analytically at vocal markers of psychiatric conditions, we launched projects to systematically replicate and extend them cross-linguistically 1/n
Is there a distrust? Possibly some, looking at the studies and at effect sizes of "1.89". Should there be? I'm not sure. I mean I'd really want to be able to build on these findings to better understand the underlying mechanisms. 2/n
and that's where it stroke me. This work shouldn't stand on its own, but with much needed complementary work on the mechanisms underlying the phenomenologically clear atypicalities (and what they can do in helping us to understand the conditions). Without that, 3/n
Read 4 tweets
Sep 25, 2020
The Puzzle of Danish: a thread on taking linguistic diversity seriously to highlight the flexibility of human cognition.

1/n
TLDR: Danish has an unusual speech opacity (consonant reduction). Danish native speakers rely more strongly on context and top-down inference. They also create more redundant speech and repeat each other more: a richer context for top-down speech processing. 2/n
The Puzzle of Danish is a project funded by the Danish council for independent research involving (besides me) @MH_Christiansen, @kristian_tylen, Dorthe Bleses, Anders Højen, Christer Johansson, @ChrisDideriksen, @fabio_trecca and @byureka . 3/n
Read 44 tweets

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