So...the DOE decided that SARS-CoV-2 originated with a "lab leak."

The available evidence shows overwhelmingly that the pandemic started at Huanan market via zoonosis.

But affirmative evidence of lab origin could change my view. What kind of evidence? 🧵
nytimes.com/2023/02/26/us/…
First of all, I have no idea what this evidence that DOE has is. All I know that it is "weak" and resulted in a conclusion of "low confidence". It reportedly comes from the DOE's own network of national labs rather than through spying.
But I do know that to be consistent with the available scientific evidence, the DOE has to explain how the virus emerged twice over 2 wks in humans at the same market the size of a tennis court, over 8 km & across a river from the only lab in Wuhan working on SARSr-CoVs.
For more on that you can see my thread on what my co-authors and I showed. By the way, today is the year anniversary from when we dropped these preprints (eventually published in @ScienceMagazine). No challenge to our work has yet survived peer review.
But that said, I'm always prepared for the possibility that new evidence can falsify a hypothesis. No hypothesis is too precious for evidence to trash.

One piece of evidence that could change my mind would be conclusive proof that WIV possessed a progenitor of SARS-CoV-2.
We don't have pandemics all the time, despite spillover being pretty common, because most spillovers are dead ends with no onward human transmission.

Pandemic-ready viruses are themselves exceedingly rare. Emergence in a situation that allows a pandemic to start is rarer still.
If WIV was doing experiments with a virus that could have evolved into SARS-CoV-2, that would dramatically change the likelihood that this virus would coincidentally emerge somewhere in Wuhan naturally, especially if it was collected years earlier in a far-off location.
Indeed, many lab leak proponents have floated a myriad versions of this possibility. We're always just a random out-of-context FOIA email or one deleted database away from uncovering THE TRUTH about what *really* happened in Wuhan.
So if this is the kind of evidence that would change my mind, why do I still think the pandemic started with zoonosis at or immediately upstream from Huanan market?

Simple. This evidence doesn't exist. Claims of a progenitor at WIV are pure speculation & unsupported by evidence.
Viruses aren't imagined or computed into existence. No serial passage, gain-of-function, humanized (transgenic) mouse studies or whatever else has been proposed to be the laboratory origin of SARS2 can happen without a progenitor.

And ZERO evidence suggests WIV had one.
No progenitor virus = no reverse genetics or isolation
No reverse genetics or isolation = no virus in culture
No virus in culture = no infectious virus at all

No infectious virus = no lab leak.
Despite 3 years of a global search for this evidence, it has not materialized, while evidence supporting zoonosis associated with Huanan has continued to stack up.

At some point, an absence of evidence might just be evidence of absence.
As I said before, I am willing to reconsider my hypothesis if presented with verifiable, affirmative evidence of a progenitor virus at WIV.

I don't know what the new evidence is, but if it was obtained from the DOE's labs, I doubt it will point to a WIV progenitor.
I'll keep an open mind when and if we ever get more information about what has caused the DOE to change their assessment (as well as toward other emerging evidence about the origin of SARS-CoV-2).
But for now, I see no evidence that suggests the current scientific evidence base is incorrect. And that evidence base continues to suggest the pandemic originated via zoonotic spillover at the Huanan market, in association with the live animal trade.

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More from @angie_rasmussen

Feb 28
We still don’t know what intel caused the DOE to adjust their conclusions about the pandemic’s origins but if it has to do with the Wuhan CDC, I can see why it’s “low confidence.”

Warning: if you thought this was a major break in the origins case, prepare for disappointment.
ODNI defines low confidence info as “scant, questionable, fragmented,or that solid analytical conclusions cannot be inferred from the information, or that the IC has significant concerns or problems with the information sources.”

A perfect description.

dni.gov/files/document… Image
Let’s talk about WCDC. It’s a public health lab & its mandate is to respond to various local health needs: epidemiology, surveillance, diagnostics, reference testing, training, emergency response, etc.

Sometimes this includes lab research, but it’s not their main function.
Read 22 tweets
Feb 24
It will be hugely challenging—but also critically important—to disentangle whether these are two zoonotic cases or human-to-human transmission.

But that isn’t yet known. Either way, it’s not great.
The current H5N1 panzootic has spread far and wide and has killed millions of birds. More troubling, it has also killed many mammals. And even more troubling, it appears to have spread between some mammals as well.
Just because H5N1 historically has not spread well between mammals doesn’t mean it won’t evolve to do so. Viruses have an extraordinary capacity to adapt to new hosts. They have to. Viruses are obligate parasites with one biological imperative: make more viruses. Adapt or die.
Read 12 tweets
Feb 23
People have been asking about the H5N1 cases in Cambodia & if there is any indication of human to human transmission. Not to my knowledge.

But I'll point to @JeremyFarrar's call for investments in vaccine development...before "a 1918-like episode”
bmj.com/content/380/bm…
Avian influenza viruses have adapted to human hosts & caused pandemics before & they will do so again. We must prepare for this inevitability.

That means we have to study these viruses to understand how they become human pathogens & use that information to develop vaccines.
Virology research has been heavily criticized for failing to prevent the SARS-CoV-2 pandemic. Some even claim that virology research caused the pandemic, despite all the evidence indicating its zoonotic origin.

Neither of these are valid arguments for less virus research.
Read 8 tweets
Feb 23
Pangolins are back on the menu of SARS-CoV-2 origin hypotheses.

Why back on the menu? Well…
For those of you not obsessively following COVID origins discourse, in early 2020, people noticed that smuggled pangolins were infected with a SARSr-CoV with a spike RBD that was very similar to the one in SARS-CoV-2.

But this wasn’t actually that new.
nature.com/articles/s4158…
Related viruses with similar SARS-CoV-2-like RBDs were originally published in 2019 to little fanfare, in a study that found both SARSr-CoVs & Sendai virus in pangolins.

They didn’t know they were like SARS2 at the time since it was pre-pandemic.

mdpi.com/1999-4915/11/1…
Read 10 tweets
Feb 20
The only thing I regret about this Tweet is referencing the intellectual property of a transphobic bigot.

I won’t apologize for affirming that spreading disinformation about vaccine safety & efficacy hurts people & can kill them. It’s a hateful, misanthropic belief system.
I’ve spent my morning blocking people sent my way yet again by a thirsty would-be influencer who uses this technique to build their platform:

Try to engage a bigger account with actual expertise in drama to siphon followers.

It’s annoying. I have a lot of blocking to do.
See here: ImageImageImageImage
Read 10 tweets
Feb 16
Today’s episode of just asking questions is yet another tiresome speculative screed about the furin cleavage site in SARS-CoV-2 spike.

But I noticed a new addition to this tedious argument: the FCS is described as a “unique pandemic feature.”

Sooooo…is it?
While admittedly “unique pandemic feature” is a more thrilling rebrand of “furin cleavage site” or “poly basic cleavage site,” FCSes are hardly unique, nor are they associated with pandemics.

So is there any reason to describe the SARS2 FCS this way, besides dark insinuations?
Now in case you aren’t following #OriginofCovid furin twitter, I’ll give a little bit of background.

Furin is a host protease (enzyme that cuts other proteins). Viruses are obligate parasites that adapt to their hosts and hijack host proteins—including proteases—to replicate.
Read 20 tweets

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