1. Something I haven’t seen much discussion of at #PathogensProject is about surrogate experimental systems for dangerous pathogens.
2. Predominantly from the retrovirus field, the establishment of lentiviral pseudotype systems (PLVs) for studying enveloped viral glycoproteins, as well as replication competent Rhabdovirus-based systems are cheap, easy and fast.
3. While there are limitations on some of the cell biology they can tell you about the dangerous virus of choice, they can give you most of the info you need to know including receptor, host range tropism, sensitivity to antibodies, vaccine escape etc.
4. Subgenomic replicons of some viruses can be useful, and replication incompetent reverse genetic systems like the one my lab use for Ebola virus also have their place, and make a lot of work possible that is just not tractable at high containment with the live pathogen.
5. But 2 areas I would point to. A general one – journal editors should recognise the value of surrogate systems used properly (as is now generally the case for PLVs), but they need to resist the lazy reviewer trope of ‘show with the real virus’ unless there is a clear need.
6. Secondly, in the UK (and I believe elsewhere in Europe), we are limited in using Rhabdovirus systems like VSV by a clash between the HSE governing human pathogens and DEFRA with animal pathogens. VSV is a problem in livestock, but fairly benign in humans and mice.
7. In the UK we cannot use VSV without some really tortuous SAPO paperwork and justification even in a BSL3 lab, yet the Merck EBOV vaccine is based on it, and in the US it is safely contained within BSL2 labs without raising any issues.
8. This raises a key question of proper, harmonised EVIDENCE BASED worldwide biosafety and biosecurity classifications for all viral pathogens. Of course, Ebola, Nipah, Lassa etc need to be BSL4.
9. Of course, sarbecoviruses should be BSL3. But why should Dengue (a mosquito-borne virus) be BSL2 in many parts of the world where it is endemic..
10. but BSL3 + ACTSA5 biosecurity requiring the lab be bomb proof and linked to armed response antiterrorist police in the UK where we don’t have the mosquitos (yet…).
11. If even this came out of an international body, we would be making progress.
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1. Contrary to popular belief, most virologists I know are not cowboys when it comes to safety. They prefer to use far more tractable surrogate systems when studying dangerous viruses. A case study to highlight the nuances of viral manipulation, GoF etc.
2. Imagine you have related 2 bat viruses. One is a transmissible deadly human pathogen and must be studied at BSL4, the other is antigenically distinct but has caused no disease in the handful of people known to have been infected or in experimentally infected mice.
3. Both viruses replicate fine in some human cell lines, but only the pathogenic virus replicates in primary human macrophages. The attenuated virus gets into these cells but fails to replicate because the inflammatory/interferon response it induces kills viral replication.
Ratcliffe - Biden and those awful virologists are blocking the CIA agreeing with me
Feith - GoF is bad; and 3 sick WIV workers..
Lowenthal - intelliegence is diffcult and we may never get a straight answer.
So this is going to be revealing 🤦♂️
More paraphrasing
Feith - all scientists that dont agree about a lab leak are by definition conflicted.
Lowethal - intelligence services just dont have enough expertise in biomedical science and public health
1. The complexity of bat sarbecovirus-S/ Rhinolophus ACE2 interactions. Something you see stated all the time from LLers is that SARS2 is 'human-adapted'.
2. This notion, in part, is based on the SC2 spike receptor binding domain (RBD) binding and using the ACE2 of the ‘presumed’ bat reservoir (R affinis) much less efficiently than human ACE2 to enter cells.
3. What is demonstrated by @SystemsVirology and co here is that two of the BANAL viruses (B52 and B236 – the former has an RBD that is the same as SC2) have quite distinct tropisms for ACE2 orthologues from different SE Asian Rhinolophus sp.
1. Revisting this famous section from the DEFUSE grant proposal because I think we will be hearing a lot about it again. And let’s analyze what it actually says and compare it to the mantra of ‘they propsed to insert FCSs in bat CoVs”
2.Firstly thevirology because even 3 yrs, the authors of high profile books don’t get it (or don’t want to). For cell entry CoV spike proteins undergo at least 2 proteolytic cleavage steps by host cell protease enzymes. One is at the S1/S2 boundary, the other at the S2’ site.
3.These processing events allow the S2 fusion peptide to be exposed and promote fusion of the viral and cellular membranes.
1: The mark of any decent hypothesis is that it needs to account for all the existing evidence without exception.
2.That means accounting for the early cases (both the HSM-linked and unlinked cases) clustering with very high statistical significance with the market.
3.It needs to account for why both lineages (A and B) both have the same HSM association, and why the evolutionarily older lineage A appeared LATER than the younger lineage B with no transitional genomes that stand up to scrutiny.