T. Ryan Gregory Profile picture
Aug 4 10 tweets 3 min read Twitter logo Read on Twitter
Let me just be as clear as I can here. 🧵

Eris (EG.5.1*) is absolutely a variant to watch and it will be dominant in many places soon if it isn't already (along with descendants of Arcturus, XBB.1.16*). That's why it got a nickname, after all.

1/
In fact, Eris (EG.5.1*) is the first variant to earn a nickname since Bellatrix (BA.1.22) in May. So, it's obviously an important one. It has a signficant growth advantage within the XBB soup and is rising rapidly in frequency around the world.

2/
However, as was the case with Kraken (XBB.1.5), my best guess is that it will not cause a major wave on its own in most places. It is likely to bring us back up to a high baseline, however. Not a tsunami, but raising the sea level again.



3/
High sea level rather than tsunamis has been the pattern in many places for a year. Don't get caught looking only for overwhelmed hospitals. A sustained high baseline means a lot of area under the curve and a lot of infections and long COVID and variant evolution.

4/
Pointing out that there's nothing "super notable" about Eris and Arcturus referred specifically to the surge in hospitalizations in Japan, which some argue is variant-driven (vs. reduced mitigations, waning immunity, etc.).

5/ Hospitalizations and variants in Japan and Canada.
In other words, the rapid increase in frequency of Eris (EG.5.1*) isn't necessarily going to mean a huge surge of hospitalizations everywhere. Other factors may be more important in the rise in levels at the end of this summer, notably waning immunity and no mitigations.

6/
A major new variant could change things again, but I don't think Eris or Arcturus or Kraken or any of the current XBBs qualifies as such. I said that back when we named Kraken.



7/
This isn't to say that EG.5.1 or other variants are no concern. They certainly are. But at this point, I think we're less at the mercy of each new XBB variant and more dealing with the consequences of dropping basically all mitigations and waning immunity.

8/
That is to say, we don't have to just accept a high baseline most of the year in perpetuity, if we would take steps to stop transmission. Less transmission also means lower odds of another major variant and the return of big waves.

9/
Reminder that good quality masks worn correctly, ventilation, and air filtration are variant-proof.

• • •

Missing some Tweet in this thread? You can try to force a refresh
 

Keep Current with T. Ryan Gregory

T. Ryan Gregory Profile picture

Stay in touch and get notified when new unrolls are available from this author!

Read all threads

This Thread may be Removed Anytime!

PDF

Twitter may remove this content at anytime! Save it as PDF for later use!

Try unrolling a thread yourself!

how to unroll video
  1. Follow @ThreadReaderApp to mention us!

  2. From a Twitter thread mention us with a keyword "unroll"
@threadreaderapp unroll

Practice here first or read more on our help page!

More from @TRyanGregory

Aug 6
Viruses don't think, learn, plan, strategize, want, outsmart, figure out, choose, or do anything of the sort.

They simply manage to infect new hosts and be replicated or they don't. Two major factors affect this: traits of the virus and traits/behaviours of the hosts.

🧵

1/
Replication is imperfect. Mistakes get made. Those are called mutations, and they occur at random with respect to whether they will have positive or negative effects on the continued success of the virus's descendants.

2/
Natural selection, by contrast, is non-random by definition. It involves a difference in survival and reproduction that is affected by heritable traits. Natural selection is strongest in large populations (because it then overrides random sampling error called genetic drift).

3/
Read 10 tweets
Aug 5
When a new variant is designated with a PANGO label, its distinguishing mutations are listed. So, for example, you may see that "EG.5 = XBB.1.9.2 + S:F456L + ORF1a:A690V + ORF1a:A3143V", and "EG.5.1 = EG.5 + S:Q52H". But what does that notation mean? 🧵 Summary of common geographical locations and defining mutations for EG.5 and EG.5.1 from cov-lineages.org.
The SARS-CoV-2 genome contains a number of protein-coding regions (genes), the one we hear about most being the spike protein (S). There are also "open reading frames" (ORFs), which are regions in between a start and stop codon -- that is, a sequence that can be read as a gene.
The letters before the colon in the mutation notation refer to the gene or open reading frame that has undergone a mutation. In the example from EG.5 and EG.5.1, that's "S" (spike) and "ORF1a" (open reading frame 1a).
Read 12 tweets
Jul 30
Open access tools for tracking variant evolution and frequencies. 🧵 of 🔗
Nextstrain:



This resource lets you track the evolution of SARS-CoV-2 variants in real time as data come in. I've written a thread on how you can use it:

https://t.co/laRx1pcxUBnextstrain.org/ncov/gisaid/gl…
CoVariants:



A detailed summary of information about the mutations found in different variants.covariants.org
Read 15 tweets
Jul 30
A few links on Corsi-Rosenthal boxes. 🧵
Corsi-Rosenthal Box Foundation:

corsirosenthalfoundation.org
Excellent Corsi-Rosenthal Box resources from Clean Air Crew:

cleanaircrew.org/box-fan-filter…
Read 5 tweets
Jul 30
On anti-viral nasal sprays. 🧵

I've used Enovid as an additional layer (e.g., when travelling or in an unavoidable crowd).

Enovid (aka VirX, aka SaNOtize) is nitric oxide.

sanotize.com/technology/our…
There is research to suggest that nitric oxide nasal sprays (NONS) can be effective, though additional trials are still ongoing.

pubmed.ncbi.nlm.nih.gov/?term=nitric+o…
Read 15 tweets
Jul 30
Going to keep a 🧵of 🔗 for posts about tools for COVID-aware folks. Feel free to bookmark and comment on any of the individual threads.
Read 17 tweets

Did Thread Reader help you today?

Support us! We are indie developers!


This site is made by just two indie developers on a laptop doing marketing, support and development! Read more about the story.

Become a Premium Member ($3/month or $30/year) and get exclusive features!

Become Premium

Don't want to be a Premium member but still want to support us?

Make a small donation by buying us coffee ($5) or help with server cost ($10)

Donate via Paypal

Or Donate anonymously using crypto!

Ethereum

0xfe58350B80634f60Fa6Dc149a72b4DFbc17D341E copy

Bitcoin

3ATGMxNzCUFzxpMCHL5sWSt4DVtS8UqXpi copy

Thank you for your support!

Follow Us on Twitter!

:(