Arijit Chakravarty Profile picture
Jun 12 โ€ข 25 tweets โ€ข 8 min read โ€ข Read on X
Thread #4 of 5: Suppose the ๐‚0๐•๐•š๐–‰ virus is carcinogenic. Why not wait for "real world" (epi) data to "prove" that the before we do anything? In this ๐Ÿงต, let's discuss why such "calm-mongering" is a reckless choice & can lead to devastating consequences for public health. (1/)
A recurrent theme during the ongoing pandemic has been the panic about public panic. @Heavyredaction & I tackled this issue last year, in an article for The Nation, making the point that Public Health spends a lot of time providing reassurances. (2/): thenation.com/article/societโ€ฆ
In a recent ๐Ÿงต, I pointed out that Sc2 may be carcinogenic. (It causes DNA double strand breaks & chromosomal instability (micronuclei), while suppressing mechanisms that prevent CIN cells replicating. As do carcinogens (& known carcinogenic viruses) (3/)
Because the traditional framework for declaring viruses carcinogenic relies on a dated mental model (the Oncogene Addiction hypothesis), existing criteria for assessing viral carcinogenicity are not appropriate for sc2, which lacks oncogenes. (4/)
Given that, the use of deductive logic is really critical at this point. Science should focus on shoring up the deductive case for Sc2 as a potential carcinogen. (Some live-cell microscopy & micronucleus assay data would be useful!) (5/)
It's pretty easy to anticipate that minimizer tactics will focus on waiting for a clearer epidemiological signal (rise in cancer rates) & questioning the causal association with ๐‚0๐•๐•š๐–‰. This is an old playbook, successfully used by Big Tobacco to create decades of delays. (6/) Image
Although cigarette smoking increases your risk of lung cancer 100x, it takes years of smoking. Most smokers don't die of lung cancer, nor are all lung cancer patients smokers. Despite strong associations, it was a long slog to establish cancer causation from epi data! (7/)


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For viruses more broadly, while viral-attributed cancers are common, it has taken us decades to identify these associations. The presence of viral sequences doesnโ€™t always track with cancers, & hazard ratios (HRs, a measure of relative increase in risk) can be very variable. (8/)
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Using tissue-specific associations for sc2 won't work- the virus infects many different tissues. Association studies will also fail- need a pool of people who've never had covid. (These people are rare, will be rarer over time &can't be readily identified, even by serology). (9/)
But, you say, if it's really a carcinogen, showing a rise in cancer rates should shut down the debate, right? It takes years for exposure to a carcinogen to lead to cancer. It'll likely be decades before the carcinogenic effects of Sc2 manifest in a rise in cancer rates. (10/)
In the meantime, people who aren't taking precautions can expect to get ๐‚0๐•๐•š๐–‰ 1-2x/yr. By the time a potential carcinogenic effect of sc2 is obvious in epi data, most people will have been infected 10-20 times. That'll be too late to be useful. (11/) medrxiv.org/content/10.110โ€ฆ
If Sc2 really is carcinogenic, waiting decades for the epi data will lock in a long tail of disease. (This is a good time to introduce , a neat collab with @gckirchoff that features interactive widgets that illustrate complex sciencey stuff.) (12/) peertopublic.com/posts
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This simple model shows a hypothetical scenario where Sc2 is carcinogenic, and governments worldwide decide to wait until cancer cases cross a certain threshold before acting on it. Let's say we wait till cancer cases are 50% higher than baseline before we act on it. (13/) Image
And let's assume that action is instantaneous & all future infections are halted on that day (12/31/2036). The red area (left) shows the number of cases above baseline. Baseline cancer cases worldwide are 18M/yr, so that gives us a total of 40M extra cases by that time. (14/)
That's pretty bad, huh? 40M people got cancer who could've maybe avoided it. Now look at the area on the right of the line corresponding to 12/31/36. It says 570M. If we stopped covid cold on that day, in this scenario, there'd still be 570M more people who will get cancer (15/)
as a result of having not taken precautions over the past 12 years. That's pretty appalling.

This simple 'toy' model shows a 'locked in' burden of disease that manifests after the threat is recognized. (You can a full description of the methods at ) (16/)peertopublic.com
In this hypothetical case, I used a hazard ratio of 3 (Getting ๐‚0๐•๐•š๐–‰ 1-2x/yr elevates your risk of cancer 3x). Of course, the real HR could be higher or lower than that. Similarly, govts could wait until cancer rates are 2 or 3x pre-pandemic rates, (17/) Image
& the delay before cancers manifest could be shorter or longer.

It doesn't take much imagination to see that some scenarios could be quite disastrous.

Note that the model makes some very optimistic assumptions about covid eradication (instantaneous). (18/)
The example I used was also somewhat optimistic about the virus: an HR of 3 is far on the low end for carcinogenic viruses, and a delay of 20 years is middle-of-the-road.

The model is interactive, you can play with at (19/) peertopublic.com/tools/delayed-โ€ฆ
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In the real world, it'll be much harder to see an increase in cancer rates. For one, these datasets are noisy, making it harder to see the signal. For another, baseline cancer rates were rising before the pandemic. The real problem will be far more challenging, because (20/)
it'll require us to see a change in slope (a higher rate of increase in incidence) rather than a simple increase in incidence.

Even if we do see a change in rates, there will be years of debate about other explanations.

Remember, we've been here before with cigarettes. (21/)
where there were dozens of associative studies with compelling differences in rates.

It'll be a long time before the epi data is incontrovertible. As the model above shows, this delay will cause a massive bolus of 'locked in' disease that plays out in the decades to follow.(22/)
This again underscores why getting into debates about cancer rates is such a trap.

The idea that viruses can cause cancer was first put forth 100+ ago, but the the list of such viruses was small until the 70s. It can take decades to designate a virus carcinogenic. (23/)
Arguments from ignorance ("we don't have any proof yet, let's just wait and see") have been weaponized over & over again throughout this pandemic, harming PH outcomes.

Deductive logic & the precautionary principle compel us to take Sc2 seriously as a potential carcinogen.(24/)
H/T @TRyanGregory @SGriffin_Lab @white_bite @0bj3ctivity @kasza_leslie @Falseflag @DavidJoffe64 @RS_Rose_Sauvage

@lisa_iannattone @DaniBeckman @ToshiAkima @FdAdF66 @WesleyWilson @_Lisa_LJ @RolandBakerIII @calirunnerdoc @ejustin46 @RadCentrism @bronterDoc @tohmes1 @DrGrahamLJ

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More from @arijitchakrav

Jun 11
Thread #3 of 5:

Is Sc2, the ๐‚0๐•๐•š๐–‰ virus, carcinogenic?

(If you've been scrolling through my threads on cancer the past couple of days, waiting for the other shoe to drop, here it is.) (1/)
We started this conversation with what causes cancer- the TL; DR of that ๐Ÿงตis - chromosomal instability (CIN) is a driving force in carcinogenesis. Events that put CIN into motion kick off a process of unbridled somatic evolution- tumor progression. (2/)

We discussed how carcinogenic viruses share a set of common properties: the initiation of CIN (via DNA double strand breaks (DSBs) & suppression of DNA damage repair (DDR) checkpoints/ apoptosis). (This is often facilitated by immune suppression). (3/)

Read 35 tweets
Jun 10
How do viruses cause cancer? (Thread #2 of a 5 part series).

There's been a fair bit of twitter-chatter about this topic lately, so let's talk about it. Understanding the process of viral carcinogenesis is key to managing the risk of viral infections. (1/)
Disclosure: I'm not a viral carcinogenesis expert. I've published on cancer as part of my day job for 25+ yrs (& on The Virus That Cannot Be Named as a 'night job' for (ugh) 4+ yrs now. This experience provides me with a unique perspective on the topic. (2/)
In my opinion, the field of viral carcinogenesis has been both driven forward & held back by the Oncogene Addiction hypothesis.

In a recent thread, I discussed its limitations & explained why an evolutionary paradigm for cancer is more appropriate.

(3/)
Read 26 tweets
Jun 9
Bit of a change of topic, but let's talk about cancer.

What causes cancer? We learned in high school that it's mutations in oncogenes- "cancer is not one disease, it's many different diseases, each driven by a different oncogenic mutation." (1/) Image
It's an attractive paradigm, because it makes it all very simple. All you have to do is find the driver mutation for any given cancer & target it to make the cancer disappear.

Someday, the vision goes, every cancer will have a personalized cure. (2/) Image
Pharma & biotech have poured billions of $ into making this vision a reality over the past two decades. Unfortunately, the money was wasted, because the vision is wrong.

I've been in pharma/biotech for 20yrs- was the Discovery team lead on 5 "Oncogene addiction" programs.(3/)
Read 26 tweets
Apr 3
@hallinen_diane @pan_accindex I think if someoneโ€™s going to make a claim like โ€œCovid doesnโ€™t harm your immune systemโ€, thatโ€™s a bold claim.

If theyโ€™re wrong, the consequences will be much more severe than the unnecessary concern that would result from a false alarm. (1/)
@hallinen_diane @pan_accindex The claim itself is contrarian, as it flies in the face of the established science. Itโ€™s beyond meaningful debate at this point that *some* cases of Covid -even mild ones- lead to depletion of immune system components for months (2/)
@hallinen_diane @pan_accindex The people who would have us believe that this is no cause for concern base their argument on the fact that it (a) only happens to some people, (b) only happens for a little while or (c) happens with other viruses as well. All three statements are true. And irrelevant here (3/)
Read 8 tweets
Jan 18
1/ Powerful testimony by @zalaly today in the Senate Hearing on Long COVID.

He makes a lot of really great points- well worth a watch!

There is no treatment for Long COVID. Recovery rates are low. (๐Ÿงต๐Ÿ‘‡)
2/ "The best way to prevent Long COVID is to prevent COVID in the first place". He makes a compelling case that this is something that requires government action.

In the meantime, we still have some agency as individuals, too. Check out:

typingmonkeys.substack.com/p/you-dont-neeโ€ฆ
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3/ The fewer times you get COVID, the better. If you do get COVID though, all is not lost, you can still move to limit your downside risk.

@TRyanGregory and I lay out the steps in the blog post below: Image
Read 6 tweets
Jan 10
@sunsweptforest Exactly. The big-name journals have a huge optimism bias.

In 2020&21, we predicted the virus would quickly evolve to evade immunity, that vaccines alone wouldnโ€™t bring the pandemic to an end, that schools would seed disease, that appeals to altruism from PH would backfire. (1/)
@sunsweptforest For the first 2-3 papers, we tried our luck at the big name journals. They would sit on the manuscript for a month and then send a form-letter rejection. Meanwhile, they were fast tracking review and publication of โ€œgood newsโ€ papers on the exact same topics (2/)
@sunsweptforest Science, in particular, actively promoted the idea that immunity to covid would be long lasting.

For example, our paper (preprint in fall 2020) on the outcome of a โ€œvax & relaxโ€ strategy made a bleak prediction- โ€œmaking COVID-19 the third leading cause of death in the USโ€ (3/)
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Read 12 tweets

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