Parmita Mishra Profile picture
Oct 15 23 tweets 6 min read Read on X
I keep saying “drug discovery” but most of my audience does not understand what this means.

Here’s a thread I worked on over the past week trying to distil down drug discovery - and why it matters in the age of AI.

OPEN THE THREAD 🧵 Image
Drug discovery is how molecules become medicine.
A $180 billion guessing game where up to 97% of candidates fail in trials.

We can now predict protein folds (thanks to AlphaFold), but still cannot simulate what a drug actually does to a living cell in real time.
At its core, drug discovery asks one question:

=> What happens inside a cell when we “perturb” it? (drug it)

Traditional biology answers by destroying the cell to measure it.

Every assay is a snapshot. Every snapshot costs reagents, time, and lives. Image
Historically, the process looked like this:
1️⃣ Identify a target — a protein or pathway driving disease.
2️⃣ Screen millions of molecules.
3️⃣ Optimize a few leads.
4️⃣ Test in animals, then people.
Ten years later, maybe one succeeds. Image
Why so much failure?

Because we’ve been studying biology as frames, not films.

Static images hide dynamics:

transient states where toxicity, resistance, or synergy emerge.
Drug effects unfold in time. But our tools freeze time. Image
Compute allows us to create thousands of potential candidates.

AI has helped us filter these, but it cannot replace wet labs without the right data. Image
MOLECULAR DYNAMICS WERE CRACKED

This is where AI entered the story.
AI gave structure prediction (AlphaFold), docking, screening.

But most AI still learns from static databases, not living data.

We need AI that learns from life itself:
continuous, label-free, real-time data. Image
CELL DYNAMICS ARE UNKNOWN BECAUSE WE DID NOT HAVE THE DATA TO GIVE AI “EYES” INTO THEM WITH OUR STATIC PLATE READING DATA.
Enter the new paradigm.

At Precigenetics, where I’m founder & CEO, we’re building exactly that:
a photonic + AI engine that observes how cells respond to any compound, in real time

without dyes, reagents, or destruction.

Think AlphaFold for whole cells.
Our platform uses novel hardware - photons interacting with molecular vibrations - to map the evolving chemistry inside each cell.

Then transformer models read these spectral time-series, predicting mechanisms of action (MoA) and fate hours before visible change.
Retrieving such data required $10,000 per plate at the bare minimum.

With Precigenetics? It requires 4 minutes of time per frame.
Once a scanner is installed, each new experiment is zero-marginal-cost.

Photons do the work.

Every scan enriches the AI model.

A data flywheel begins - the more we observe, the smarter the engine gets.
That’s how biology becomes digitizable. Image
We already see it in action.
In melanoma disease models, we detect apoptotic vs. non-apoptosis cell death before its visible - predicting clinical trials before they happen.
it gets a whole lot more interesting once you consider human organoids.

by testing drugs on patient cells before ever undergoing a $4B clinical trial for 10 years, with 97% odds against you, we learn how cells will interact in real time.

will a drug affect only cancer cells?
will the drug cause liver toxicity? we model the liver and try it out on a cohort.

will the drug cause off-target effects? the data to predict these effects finally exists - and it is NOT mouse data anymore; it is disease modelling on real, patient cells.
this way, you are not working AI around data that is not going to make your drug win.

you are feeding AI the data it needs to know how drugs interact with actual human biology, and letting it do the work.
drug discovery is a matter of understanding which drugs work.

after this, pharma is excellent at taking these drugs to trials.

what it cannot do without Precigenetics, is - figure out which drugs will WIN.
using this novel data, terabytes of it that we have generated in our wet lab, with our custom built hardware, you can finally beat the odds.

the only way to beat Eroom's law is... Image
...by using a platform that can give you data on billions of cells, in a full-stack, vertically-integrated manner. we achieve this with biophotonics.
we cured mice of cancer decades ago.

because we had this data for mice, and it came with a lot of torture.

we couldn't generalize this to human beings.
but now, we are past mice. we model diseases in human beings, and finally, we have the compute to generalize our understanding of human-drug interactions.

all that is missing? it is the data. the standardized, human data. and it lives in our computers.
we standardize data generation, build models, and make it easy for pharmas and AI companies to know that they are betting on the winning drug.

we study cells at the level drugs act on - sub-cellular - and aim to predict clinical trials in hours, not years.
as the flywheel effect expands, our ability to do this expands with it.

cells act in predictable ways - but the context is too broad for scientists.

transformers can parallelize, just like they did with AlphaFold, and make every pharma, every AI company win.

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More from @prmshra

Sep 26
how do we know that people in the past had cancer and when did we even know what cancer was?

a word for cancer existed long before microscopes or pathology.

the history of cancer is far more exciting than we realize.

🧵
the idea is older than modern medicine. Hippocrates (400 BCE) used the word karkinos (crab) for tumors with “claw-like” spread. Galen (200 CE) expanded it. the word cancer is a translation of this lineage.
this existed across civilizations

in India, texts like Sushruta Samhita circa 600 BCE described “arbuda”: hard, immobile, enlarging masses that ulcerated and killed slowly. not called “cancer,” but the descriptions line up with malignancies.
Read 16 tweets
Jun 8
Biotech is a 1.55 trillion dollar industry, projected to grow to 3.88 trillion by 2030.

How is biotech incentivized to do all this up front investment to make new breakthroughs that lead to life saving treatments?

You finally get the answers today.
Biotech industry: thread. Image
Tech investors see quick iterations:

Build. Test. Pivot. Scale.

Biotech demands patience:

Experiment=>Fail=>Refine, then repeat: often over years.

Your challenge: Balancing investor impatience with biological patience.
Unlike software, biotech innovation directly translates to high-margin products (drugs).

Pharma margins (gross profit; 70%) dwarf general industry (gross profit: 40%%). Why?

Each approved drug solves life-or-death problems: high value, premium prices.Image
Read 29 tweets
Mar 13
responded in detail bcs grimes is awesome:

17th-century: coffeehouses emerge as epicenters of intellectual exchange.

discussions shape the scientific community. new physical locations mark societal shifts.

coffee houses…basically transformed science.

(1/ 🧵)
a lot of scientific discoveries can in some way be traced back to coffee or tea.

over coffee, scholars/scientists/thinkers could meet ANYONE with an interesting thought - other scientists, artists, random people.

it was kind of like the X app today, but IRL.
coffeehouses promoted

1. sobriety in a time of day drinking
2. stimulated focused intellectual discourse, unlike alehouses

collaborations and cross-discipline translation of ideas = SCIENCE.
Read 10 tweets
Dec 9, 2024
many requested a deep-dive on androgenetic alopecia—male pattern baldness

male pattern baldness/hair loss (MPB/MPHL) affects 30-50% of men by age 50.

let's talk about the biology, current treatments, and cutting-edge research on hair follicle (HF) regeneration. Image
MPB is a complex polygenic disorder

it is influenced by
-androgens (male sex hormones)
-aging
-environmental factors.

it causes progressive miniaturization of hair follicles in genetically susceptible areas of the scalp Image
under the influence of androgens like DHT, follicles go from producing robust “terminal” hairs to fine “vellus” hairs.

they spend more time resting, producing thinner hairs each cycle.

most people do not even notice they are losing hair until a majority of the hair is gone. Image
Read 30 tweets
Nov 27, 2024
In a surprising paper published in Nature, scientists accomplished what sounds impossible: using genes from a single-celled organism to create mouse stem cells, which eventually developed into a living, breathing mouse. Image
Animal multicellularity emerged ~700mn years ago.

The genes in this study—from choanoflagellates, ancient single-celled organisms—are somewhat of evolutionary relics.

They predate multicellular life and now appear to have played a foundational role in animal development. Image
Choanoflagellates don’t form stem cells, but they have versions of Sox and POU genes.

In animals, these same genes drive pluripotency—the ability of stem cells to turn into any cell type. Image
Read 11 tweets
Nov 25, 2024
A friend asked me to explain DNA, RNA, and epigenetics. he said that others had tried before, but it didn’t click for him.

I happen to play the piano, so I gave him a simple, albeit imperfect, analogy.

After this analogy, he finally understood! Here’s the piano analogy.

🧵 Image
Imagine a piano with 30,000 keys. Each key represents a gene.

Nearly all of your somatic cells have the exact same piano—the same keys, the same genes. So why does a nerve cell look different from a cheek cell?

Because they’re playing different pieces on the identical pianos. Image
Image
The piano is just a set of keys! The music—the composition—is the result of playing specific keys in a particular sequence and rhythm.

Pressing a key to play a note is like expressing a gene to produce mRNA. Image
Read 8 tweets

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