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This #EOSS funding from @cziscience for #DESeq2 and #tximeta wrapped up at the end of 2021.
Reporting in this 🧵 on what we developed:
Reporting in this 🧵 on what we developed:
1. @kwame_forbes wrote DESeq2::integrateWithSingleCell() which helps user locate publicly available SC datasets followed by visualization with his own R package:
kwameforbes.github.io/vizWithSCE/
Kwame was then a @UNCPREP scholar, now a first year BCB student at UNC 🧬💻🎉
kwameforbes.github.io/vizWithSCE/
Kwame was then a @UNCPREP scholar, now a first year BCB student at UNC 🧬💻🎉
2. Some Bioc folks and a team at UNC worked on extending the tximeta + DESeq2 + plyranges workflow that @_StuartLee @lawremi and I started in the fluentGenomics paper:
sa-lee.github.io/fluentGenomics/
sa-lee.github.io/fluentGenomics/
