Discover and read the best of Twitter Threads about #Sublineages
Most recents (18)
#SARSCoV2 #Omicron family quickly swells to 900+ #sublineages!
Add another 203+ recombinant lineages (w/ Omicron partner)
Currently, we are watching "Omicron" Great-Great-Great grand kids.. especially the recombinant families..
Recombinants have outcompeted others globally!
Add another 203+ recombinant lineages (w/ Omicron partner)
Currently, we are watching "Omicron" Great-Great-Great grand kids.. especially the recombinant families..
Recombinants have outcompeted others globally!
Expanding XBB family
Welcome to XBB.1.5 grand/great-grand kids
EM.1 (XBB.1.5.7.1)
EK.1 (XBB.1.5.13.1)
EK.2(XBB.1.5.13.2)
EK.2.1(XBB.1.5.13.2.1)
EK.3(XBB.1.5.13.3)
EL.1(XBB.1.5.14.1)
FD.1(XBB.1.5.15.1)
FD.1.1(XBB.1.5.15.1.1)
EU.1(XBB.1.5.26.1)
EU.1.1(XBB.1.5.26.1.1)
Welcome to XBB.1.5 grand/great-grand kids
EM.1 (XBB.1.5.7.1)
EK.1 (XBB.1.5.13.1)
EK.2(XBB.1.5.13.2)
EK.2.1(XBB.1.5.13.2.1)
EK.3(XBB.1.5.13.3)
EL.1(XBB.1.5.14.1)
FD.1(XBB.1.5.15.1)
FD.1.1(XBB.1.5.15.1.1)
EU.1(XBB.1.5.26.1)
EU.1.1(XBB.1.5.26.1.1)
Simplified Phylogenetic tree from @CiscoRucinski to visualize XBB family (and other Lineages)
observablehq.com/@ciscorucinski…
observablehq.com/@ciscorucinski…
#Omicron family swells to 653+ #sublineages!
Currently, we are watching "Omicron" Great-Great-Great grand kids.. especially the recombinant family members
Expected to outcompete other circulating Omicrons including Omicron-BQ*
XBB.1.5* poised to take over North America soon!
Currently, we are watching "Omicron" Great-Great-Great grand kids.. especially the recombinant family members
Expected to outcompete other circulating Omicrons including Omicron-BQ*
XBB.1.5* poised to take over North America soon!
BQ* family swells to 73
New members CZ.1, DN.1, DN.1.1, DK.1, DP.1, CW.1, DM.1, among others
Source: @PangoNetwork
New members CZ.1, DN.1, DN.1.1, DK.1, DP.1, CW.1, DM.1, among others
Source: @PangoNetwork
Recombinant lineage watch list
Tracking #BA4* and #BA5* #Omicron #Sublineages over time
This tracker includes only sequences with signature mutations👇
Sequence count: 56,087
BA.4*: 17,971
BA.5*: 38,116
Tracker: public.tableau.com/app/profile/ra…
Updated 6/25/2022
This tracker includes only sequences with signature mutations👇
Sequence count: 56,087
BA.4*: 17,971
BA.5*: 38,116
Tracker: public.tableau.com/app/profile/ra…
Updated 6/25/2022
BA.4*/BA.5* Global Hotspots
#UnitedKingdom, #Israel, #Denmark, #UnitedStates, #Germany, #Belgium, #France, #Australia, #Italy, #Ireland, #Austria, #Netherlands, #Singapore, #Mexico, #Spain, #NewZealand, #Canada, #Indonesia
Tracker: public.tableau.com/app/profile/ra…
#15DayTrends
#UnitedKingdom, #Israel, #Denmark, #UnitedStates, #Germany, #Belgium, #France, #Australia, #Italy, #Ireland, #Austria, #Netherlands, #Singapore, #Mexico, #Spain, #NewZealand, #Canada, #Indonesia
Tracker: public.tableau.com/app/profile/ra…
#15DayTrends
Tracking #BA4 and #BA5 #Omicron #Sublineages over time
This tracker includes only sequences with signature mutations👇
Sequence count: 13,079
Tracker: public.tableau.com/app/profile/ra…
Updated 6/07/2022
This tracker includes only sequences with signature mutations👇
Sequence count: 13,079
Tracker: public.tableau.com/app/profile/ra…
Updated 6/07/2022
BA.4/5 is rapidly🔥 increasing in the #UnitedStates!
Top5 BA.4/5 hotspots: #SouthAfrica, #USA, #UnitedKingdom, #Portugal and #Germany
Top5 BA.4/5 hotspots: #SouthAfrica, #USA, #UnitedKingdom, #Portugal and #Germany
Tracking #BA4/#BA5 in #Asia
Hotspots:
BA.4 - #Israel, #Singapore, #Japan, #HongKong, #India, #SouthKorea
BA.5- #Israel, #Singapore, #India, #Japan, #Philippines
Hotspots:
BA.4 - #Israel, #Singapore, #Japan, #HongKong, #India, #SouthKorea
BA.5- #Israel, #Singapore, #India, #Japan, #Philippines
Tracking #BA4 and #BA5 #Omicron #Sublineages over time
This tracker includes only sequences with signature mutations👇
Sequence count: 11,778
Tracker: public.tableau.com/app/profile/ra…
Updated 6/06/2022
This tracker includes only sequences with signature mutations👇
Sequence count: 11,778
Tracker: public.tableau.com/app/profile/ra…
Updated 6/06/2022
BA.4/5 is quickly increasing in #UnitedStates!
Top5 BA.4/5 hotspots: #SouthAfrica, #USA, #UnitedKingdom, #Portugal and #Germany
Top5 BA.4/5 hotspots: #SouthAfrica, #USA, #UnitedKingdom, #Portugal and #Germany
Tracking #BA4 and #BA5 #Omicron #Sublineages over time
This tracker includes only sequences with signature mutations👇
Sequence count: 10,779
Tracker: public.tableau.com/app/profile/ra…
Updated 6/05/2022
This tracker includes only sequences with signature mutations👇
Sequence count: 10,779
Tracker: public.tableau.com/app/profile/ra…
Updated 6/05/2022
BA.4/5 is quickly increasing in #UnitedStates!
Top5 BA.4/5 hotspots: #SouthAfrica, #USA, #UnitedKingdom, #Germany and #Portugal
Top5 BA.4/5 hotspots: #SouthAfrica, #USA, #UnitedKingdom, #Germany and #Portugal
Tracking #BA4 and #BA5 #Omicron #Sublineages over time
This tracker includes only sequences with signature mutations👇
Sequence count: 10,658
Tracker: public.tableau.com/app/profile/ra…
Updated 6/04/2022
This tracker includes only sequences with signature mutations👇
Sequence count: 10,658
Tracker: public.tableau.com/app/profile/ra…
Updated 6/04/2022
BA.4/5 is quickly increasing in #UnitedStates!
Top5 BA.4/5 hotspots: #SouthAfrica, #USA, #UnitedKingdom, #Germany and #Portugal
Top5 BA.4/5 hotspots: #SouthAfrica, #USA, #UnitedKingdom, #Germany and #Portugal
Tracking #BA4 and #BA5 #Omicron #Sublineages over time
This tracker includes only sequences with signature mutations👇
Tracker: public.tableau.com/app/profile/ra…
Updated 5/22/2022
This tracker includes only sequences with signature mutations👇
Tracker: public.tableau.com/app/profile/ra…
Updated 5/22/2022
Tracking #BA4/#BA4 in #Asia and #Oceania
Hotspots: #Israel, #Hongkong, #NewSouthWales (#Australia), #Singapore
Emerging Hotspots: #India
#NewZealand (MIQ facility)
Hotspots: #Israel, #Hongkong, #NewSouthWales (#Australia), #Singapore
Emerging Hotspots: #India
#NewZealand (MIQ facility)
Tracking #BA4/#BA5 in #Europe
Hotspots
BA.4: #UnitedKingdom, #Denmark, #Germany, #Belgium, #Italy, #Netherlands
BA.5: #Germany, #Portugal, #UnitedKingdom, #Austria, #Spain, #France
Hotspots
BA.4: #UnitedKingdom, #Denmark, #Germany, #Belgium, #Italy, #Netherlands
BA.5: #Germany, #Portugal, #UnitedKingdom, #Austria, #Spain, #France
Tracking #BA4 and #BA5 #Omicron #Sublineages over time
This tracker includes only sequences with signature mutations👇
Tracker: public.tableau.com/app/profile/ra…
Updated 5/21/2022
This tracker includes only sequences with signature mutations👇
Tracker: public.tableau.com/app/profile/ra…
Updated 5/21/2022
Tracking #BA4/#BA4 in #Asia and #Oceania
Hotspots: #Israel, #Hongkong, #NewSouthWales (#Australia), #Singapore
Emerging Hotspots: #India
#NewZealand (MIQ facility)
Hotspots: #Israel, #Hongkong, #NewSouthWales (#Australia), #Singapore
Emerging Hotspots: #India
#NewZealand (MIQ facility)
Tracking #BA4 and #BA5 #Omicron #Sublineages over time
This tracker includes only sequences with signature mutations👇
Tracker: public.tableau.com/app/profile/ra…
Updated 5/20/2022
This tracker includes only sequences with signature mutations👇
Tracker: public.tableau.com/app/profile/ra…
Updated 5/20/2022
Tracking #BA4/#BA4 in #Asia and #Oceania
Hotspots: #Israel, #Hongkong, #NewSouthWales (#Australia), #Singapore
Emerging Hotspots: #India
Hotspots: #Israel, #Hongkong, #NewSouthWales (#Australia), #Singapore
Emerging Hotspots: #India
Tracking #BA4 and #BA5 #Omicron #Sublineages over time
This tracker includes only sequences with signature mutations👇
Tracker: public.tableau.com/app/profile/ra…
Updated 5/02/2022
This tracker includes only sequences with signature mutations👇
Tracker: public.tableau.com/app/profile/ra…
Updated 5/02/2022
#COVID19 #VariantDashboard - #UnitedStates
TOP lineages (15-DAY TRENDS):
24.63% BA.2.12.1, <- Spike:L452Q
17.54% BA.2,
14.93% BA.2.9,
12.00% BA.2.12,
11.38% BA.2.10,
9.55% BA.2.3, and
2.35% BA.1.1
Tracker (by State): tinyurl.com/mryj4uu7
#OmicronUpdates 05/01/22
TOP lineages (15-DAY TRENDS):
24.63% BA.2.12.1, <- Spike:L452Q
17.54% BA.2,
14.93% BA.2.9,
12.00% BA.2.12,
11.38% BA.2.10,
9.55% BA.2.3, and
2.35% BA.1.1
Tracker (by State): tinyurl.com/mryj4uu7
#OmicronUpdates 05/01/22
#OmicronVariantUpdates #UnitedStates 05/01/22
Top circulating #sublineages: BA.2.12.1, BA.2*, BA.2.9, BA.2.12, BA.2.10, BA.2.3, and BA.1.1
* includes recently designated BA.2.x.y
Top circulating #sublineages: BA.2.12.1, BA.2*, BA.2.9, BA.2.12, BA.2.10, BA.2.3, and BA.1.1
* includes recently designated BA.2.x.y
Tracking #BA4 and #BA5 #Omicron #Sublineages over time
This tracker includes only sequences with signature mutations👇
Tracker: public.tableau.com/app/profile/ra…
Updated 5/01/2022
This tracker includes only sequences with signature mutations👇
Tracker: public.tableau.com/app/profile/ra…
Updated 5/01/2022
#COVID19 #VariantDashboard - #UnitedStates
TOP lineages (15-DAY TRENDS):
23.39% BA.2.12.1, <- Spike:L452Q
19.16% BA.2,
14.85% BA.2.9,
12.25% BA.2.10,
10.79% BA.2.12,
9.43% BA.2.3 and
2.33% BA.1.1
Tracker (by State): tinyurl.com/mryj4uu7
#OmicronUpdates 04/30/22
TOP lineages (15-DAY TRENDS):
23.39% BA.2.12.1, <- Spike:L452Q
19.16% BA.2,
14.85% BA.2.9,
12.25% BA.2.10,
10.79% BA.2.12,
9.43% BA.2.3 and
2.33% BA.1.1
Tracker (by State): tinyurl.com/mryj4uu7
#OmicronUpdates 04/30/22
#OmicronVariantUpdates #UnitedStates 04/30/22
Top circulating #sublineages: BA.2.12.1, BA.2*, BA.2.9, BA.2.10, BA.2.12, BA.2.3, and BA.1.1
* includes recently designated BA.2.x.y
Top circulating #sublineages: BA.2.12.1, BA.2*, BA.2.9, BA.2.10, BA.2.12, BA.2.3, and BA.1.1
* includes recently designated BA.2.x.y
Sequence count by Division - #UnitedStates 04/30/22
#NewYork, #NorthCarolina, #Arizona, #California and #Connecticut have submitted >125 sequences with sample collection dates between April 15 to April 30, 2022.
#NewYork, #NorthCarolina, #Arizona, #California and #Connecticut have submitted >125 sequences with sample collection dates between April 15 to April 30, 2022.
#COVID19 #VariantDashboard - #UnitedStates
BA.2.12.1 is the top circulating lineage in the USA
Its not the dominating strain yet by looks like it will get there in 2-3 weeks!
Tracker (by State): tinyurl.com/mryj4uu7
#OmicronUpdates 04/29/22
BA.2.12.1 is the top circulating lineage in the USA
Its not the dominating strain yet by looks like it will get there in 2-3 weeks!
Tracker (by State): tinyurl.com/mryj4uu7
#OmicronUpdates 04/29/22
#COVID19 #VariantDashboard
TOP lineages (15-DAY TRENDS) - #UnitedStates:
23.76% BA.2.12.1, <-S:L452Q
19.22% BA.2,
15.47% BA.2.9,
11.81% BA.2.10,
10.45% BA.2.12,
9.31% BA.2.3 and
2.64% BA.1.1
Tracker (by State): tinyurl.com/mryj4uu7
#OmicronUpdates 04/28/22
TOP lineages (15-DAY TRENDS) - #UnitedStates:
23.76% BA.2.12.1, <-S:L452Q
19.22% BA.2,
15.47% BA.2.9,
11.81% BA.2.10,
10.45% BA.2.12,
9.31% BA.2.3 and
2.64% BA.1.1
Tracker (by State): tinyurl.com/mryj4uu7
#OmicronUpdates 04/28/22
*Typo corrected: Its not the dominating strain yet *but* looks like it will get there in 2-3 weeks!
#COVID19 #VariantDashboard - #UnitedStates
TOP lineages (15-DAY TRENDS):
27.06% BA.2,
15.80% BA.2.9,
13.04% BA.2.12.1, <---Spike #L452Q
12.27% BA.2.12,
8.97% BA.2.3,
8.13% BA.1.1, and
8.06% BA.2.10
Tracker (by State): tinyurl.com/mryj4uu7
#OmicronUpdates 04/18/22
TOP lineages (15-DAY TRENDS):
27.06% BA.2,
15.80% BA.2.9,
13.04% BA.2.12.1, <---Spike #L452Q
12.27% BA.2.12,
8.97% BA.2.3,
8.13% BA.1.1, and
8.06% BA.2.10
Tracker (by State): tinyurl.com/mryj4uu7
#OmicronUpdates 04/18/22
#OmicronVariantUpdates #UnitedStates 04/19/22
Top circulating #sublineages: BA.2*, BA.2.9, BA.2.12.1, BA.2.12, BA.2.3, BA.1.1, and BA.2.10
* includes recently designated BA.2.x.y
Top circulating #sublineages: BA.2*, BA.2.9, BA.2.12.1, BA.2.12, BA.2.3, BA.1.1, and BA.2.10
* includes recently designated BA.2.x.y
Sequence count by Division - #UnitedStates 04/19/22
#NewYork, #California, ##Texas, #Illinois, #NewJersey and #Washington have submitted >200 sequences with sample collection dates between April 04 to April 19, 2022.
#NewYork, #California, ##Texas, #Illinois, #NewJersey and #Washington have submitted >200 sequences with sample collection dates between April 04 to April 19, 2022.
#COVID19 #VariantDashboard - #UnitedStates
TOP lineages (15-DAY TRENDS):
27.06% BA.2,
15.54% BA.2.9,
12.50% BA.2.12.1, <-- Spike L452Q!
11.73% BA.2.12,
9.49% BA.2.3,
8.43% BA.1.1, and
8.43% BA.2.10
Tracker (by State): tinyurl.com/mryj4uu7
#OmicronUpdates 04/18/22
TOP lineages (15-DAY TRENDS):
27.06% BA.2,
15.54% BA.2.9,
12.50% BA.2.12.1, <-- Spike L452Q!
11.73% BA.2.12,
9.49% BA.2.3,
8.43% BA.1.1, and
8.43% BA.2.10
Tracker (by State): tinyurl.com/mryj4uu7
#OmicronUpdates 04/18/22
#OmicronVariantUpdates #UnitedStates 04/18/22
Top circulating #sublineages: BA.2*, BA.2.9, BA.2.12.1, BA.2.12, BA.2.3, BA.1.1, and BA.2.10
* includes recently designated BA.2.x.y
Top circulating #sublineages: BA.2*, BA.2.9, BA.2.12.1, BA.2.12, BA.2.3, BA.1.1, and BA.2.10
* includes recently designated BA.2.x.y
Sequence count by Division - #UnitedStates 04/18/22
#NewYork, #California, ##Texas, #Illinois, #Washington, #NewJersey and #Florida have submitted >200 sequences with sample collection dates between April 03 to April 18, 2022.
#NewYork, #California, ##Texas, #Illinois, #Washington, #NewJersey and #Florida have submitted >200 sequences with sample collection dates between April 03 to April 18, 2022.
#COVID19 #VariantDashboard - #UnitedStates
TOP lineages (15-DAY TRENDS):
23.33% BA.2,
16.87% BA.2.9,
12.70% BA.2.10,
10.87% BA.2.3,
9.68% BA.2.12,
9.56% BA.2.12.1,
8.58% BA.1.1, and
1.72% BA.2.5
Tracker (by State): tinyurl.com/mryj4uu7
#OmicronUpdates 04/17/22
TOP lineages (15-DAY TRENDS):
23.33% BA.2,
16.87% BA.2.9,
12.70% BA.2.10,
10.87% BA.2.3,
9.68% BA.2.12,
9.56% BA.2.12.1,
8.58% BA.1.1, and
1.72% BA.2.5
Tracker (by State): tinyurl.com/mryj4uu7
#OmicronUpdates 04/17/22
#OmicronVariantUpdates #UnitedStates 04/17/22
Top circulating #sublineages: BA.2*, BA.2.9, BA.2.10, BA.2.3, BA.2.12, BA.2.12.1, and BA.1.1
* includes recently designated BA.2.x.y
Top circulating #sublineages: BA.2*, BA.2.9, BA.2.10, BA.2.3, BA.2.12, BA.2.12.1, and BA.1.1
* includes recently designated BA.2.x.y
Sequence count by Division - #UnitedStates 04/17/22
#NewYork, #California, #Washington, #NewJersey, #Colorado and #WashingtonDC have submitted >100 sequences with sample collection dates between April 2st to April 17, 2022.
#NewYork, #California, #Washington, #NewJersey, #Colorado and #WashingtonDC have submitted >100 sequences with sample collection dates between April 2st to April 17, 2022.
