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Introducing Flanker - new preprint with @wtmatlock #liamshaw and @NicStoesser @ModMedMicro biorxiv.org/content/10.110… - github.com/wtmatlock/flan… thread..
Flanker is a reference free tool to faciliate analysis of flanking regions around genes - it extracts sequences around genes of interest then clusters these based on mash distance thresholds (lots of tunable options to customise this) 
There are lots of great tools for studying mobile genetic elements like TETyper/MEFinder/Galileo etc but these all rely on reference databases and specialist knowledge.
Super excited to announce the nf-core/rnaseq version 2.0 release! One of our most used pipelines, we have completely re-written it from the ground up using the new and shiny, modular @nextflowio DSL2 language! 🧙♂️✨
github.com/nf-core/rnaseq…
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github.com/nf-core/rnaseq…
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This is the first outing for the new @nf_core DSL2 standards, defined in github.com/nf-core/modules 🏗 This repo has self-contained @nextflowio DSL2 modules, each wrapping a tool. nf-core/modules can be reused by the entire @nextflowio community! It’s all about recycling ♻️
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nf-core/rnaseq v2.0 is also the first @nf_core pipeline that exclusively uses #bioconda and @BioContainers 📦 It uses the one-process : one-container model, that typifies true workflow modularity.
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