Discover and read the best of Twitter Threads about #multiqc
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#Nextflow is a fantastic language and workflow runtime, which allow us to write clean logic and to separate it to the configuration. The same workflow can transparently run locally, on your #HPC or in the #cloud!
My slides are available on Github: github.com/Bioinfo-skills…
My slides are available on Github: github.com/Bioinfo-skills…
And the repository itself shows a simple example of a "de novo" assembly pipeline for bacterial genomes
Super excited to announce the nf-core/rnaseq version 2.0 release! One of our most used pipelines, we have completely re-written it from the ground up using the new and shiny, modular @nextflowio DSL2 language! 🧙♂️✨
github.com/nf-core/rnaseq…
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github.com/nf-core/rnaseq…
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This is the first outing for the new @nf_core DSL2 standards, defined in github.com/nf-core/modules 🏗 This repo has self-contained @nextflowio DSL2 modules, each wrapping a tool. nf-core/modules can be reused by the entire @nextflowio community! It’s all about recycling ♻️
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nf-core/rnaseq v2.0 is also the first @nf_core pipeline that exclusively uses #bioconda and @BioContainers 📦 It uses the one-process : one-container model, that typifies true workflow modularity.
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