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Parece que tenemos una nueva variante del covid made in Peru. Se llama omicron DJ.1, ha estado creciendo en las últimas semanas y podría estar detrás de la ola actual de casos.🧵
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Este análisis se basa en el último set de #datosabiertos disponibles para Perú, generado por lxs colegas de @INS_Peru y compartidos en @GISAID. Llegan hasta la última semana octubre y se suben nuevas secuencias todas las semanas.
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Hace unos días les hablé de las múltiples variantes omicrones que han aparecido: Linajes distintos entre sí pero que convergen en las mismas mutaciones de la proteína spike que se asocian a unión de anticuerpos y afinidad por el receptor ACE2.
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#COVID19 #VariantDashboard - #UnitedStates
TOP lineages (15-DAY TRENDS):
46.66% BA.2.12.1**,
23.33% BA.5^^,
12.15% BA.4^^,
7.64% BA.2,
4.24% BA.5.1^^,
1.29% BA.2.9 and
1.17% unassigned
**S:L452Q; ^^S:L452R/F486V
Tracker: tinyurl.com/mryj4uu7
#OmicronUpdates 6/27/22
TOP lineages (15-DAY TRENDS):
46.66% BA.2.12.1**,
23.33% BA.5^^,
12.15% BA.4^^,
7.64% BA.2,
4.24% BA.5.1^^,
1.29% BA.2.9 and
1.17% unassigned
**S:L452Q; ^^S:L452R/F486V
Tracker: tinyurl.com/mryj4uu7
#OmicronUpdates 6/27/22
#OmicronVariantUpdates #UnitedStates 06/27/22
Top 5 lineages:
BA.2.12.1, ⬇️ (Spike: L452Q)
BA.5, ⬆️ (Spike: L452R)
BA.4 ⬆️ (Spike: L452R)
BA.2 ⬇️
BA.5.1 ⬆️👀 (Lineage prevalent in #Portugal)
* includes recently designated BA.2.x.y and undesignated BA.2s
Top 5 lineages:
BA.2.12.1, ⬇️ (Spike: L452Q)
BA.5, ⬆️ (Spike: L452R)
BA.4 ⬆️ (Spike: L452R)
BA.2 ⬇️
BA.5.1 ⬆️👀 (Lineage prevalent in #Portugal)
* includes recently designated BA.2.x.y and undesignated BA.2s
#SARSCoV2 lineages in USA (#15DayTrends)
Circulating #BA5*/#BA4* sub-lineages:
BA.5, BA.4.1, BA.5.2.1, BA.5.1, BA.4, BA.5.2, BA.5.3.1, BE.1, BF.1, BA.5.3
Assignments via: #Nextclade #PANGO - clades.nextclade.org
Circulating #BA5*/#BA4* sub-lineages:
BA.5, BA.4.1, BA.5.2.1, BA.5.1, BA.4, BA.5.2, BA.5.3.1, BE.1, BF.1, BA.5.3
Assignments via: #Nextclade #PANGO - clades.nextclade.org
#OmicronUpdates #NewLineagesAlert
BA.1.22 -Prevalent in #Peru
BA.2.17 - #Vietnam and others
BA.2.18 - #UK/#Ireland
BA.2.19 -#Germany
XU - BA.1*/BA.2 recombinant - #Japan/#Canada/#India
(BA -alias of B.1.1.529)
#PANGO issues: #520, #522, #528, #529, #535
BA.1.22 -Prevalent in #Peru
BA.2.17 - #Vietnam and others
BA.2.18 - #UK/#Ireland
BA.2.19 -#Germany
XU - BA.1*/BA.2 recombinant - #Japan/#Canada/#India
(BA -alias of B.1.1.529)
#PANGO issues: #520, #522, #528, #529, #535
These are new PANGO designations
Key mutations:
BA.2.17 - ORF3a:D173Y
BA.2.18 - S:K417T
BA.2.19 - ORF1a:T333M
more to follow ..... will update key mutational differences and transmission advantage (if any)
Other designations are in 🧵:
Key mutations:
BA.2.17 - ORF3a:D173Y
BA.2.18 - S:K417T
BA.2.19 - ORF1a:T333M
more to follow ..... will update key mutational differences and transmission advantage (if any)
Other designations are in 🧵:
#OmicronUpdates #NewLineagesAlert
BA.2.22 prevalent in #UnitedKingdom
BA.2.21 prevalent in #USA/#Canada
BA.2.20 prevalent in #Canada
(BA alias of B.1.1.529)
PANGO issues: #547 #562 #544
BA.2.22 prevalent in #UnitedKingdom
BA.2.21 prevalent in #USA/#Canada
BA.2.20 prevalent in #Canada
(BA alias of B.1.1.529)
PANGO issues: #547 #562 #544
New #PANGO designations - BA.2.*
BA.2.4Alias of B.1.1.529.2.4, #Singapore lineage
BA.2.5Alias of B.1.1.529.2.5, lineage in #Portugal and other countries
BA.2.6Alias of B.1.1.529.2.6, lineage in #France and other countries
BA.2.7Alias of B.1.1.529.2.7, #USA lineage
BA.2.4Alias of B.1.1.529.2.4, #Singapore lineage
BA.2.5Alias of B.1.1.529.2.5, lineage in #Portugal and other countries
BA.2.6Alias of B.1.1.529.2.6, lineage in #France and other countries
BA.2.7Alias of B.1.1.529.2.7, #USA lineage
These are new designations - branching from the BA.2 subvariant
more to follow ..... will update key mutational differences and transmission advantage (if any)
more to follow ..... will update key mutational differences and transmission advantage (if any)
BA.2.4 (aka B.1.1.529.2.4) | prevalent in Singapore
Key mutation: ORF6:M58K
COV-spectrum predicts a growth advantage of 14% over BA.2 and 46% over BA.1.1 in #Singapore
BA.2 and BA.1.1 are currently the dominant lineages in circulation in Singapore
Key mutation: ORF6:M58K
COV-spectrum predicts a growth advantage of 14% over BA.2 and 46% over BA.1.1 in #Singapore
BA.2 and BA.1.1 are currently the dominant lineages in circulation in Singapore
