Discover and read the best of Twitter Threads about #refseq
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It’s another Thursday, and that means it’s time for another #tweetorial! Today, we want to show you how you can view RefSeq #annotations on Ensembl 🥳
#bioinf #genomics #assembly #EnsemblTraining
It’s another Thursday, and that means it’s time for another #tweetorial! Today, we want to show you how you can view RefSeq #annotations on Ensembl 🥳
#bioinf #genomics #assembly #EnsemblTraining
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While Ensembl gene models are annotated directly on the reference genome, #RefSeq are annotated on mRNA sequences. In other words: genome browsers will have different annotation methods, so you might be interested in comparing these annotations side-by-side 📖🤔
While Ensembl gene models are annotated directly on the reference genome, #RefSeq are annotated on mRNA sequences. In other words: genome browsers will have different annotation methods, so you might be interested in comparing these annotations side-by-side 📖🤔
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👂🏽You say you want to make direct comparisons of annotations between @NCBI’s RefSeq and Ensembl? Now is your time to try it out on Ensembl! 🏃🏽
👂🏽You say you want to make direct comparisons of annotations between @NCBI’s RefSeq and Ensembl? Now is your time to try it out on Ensembl! 🏃🏽
🦠🧬🖥️ Excited to share release v1.0 of Bakta: a new tool for rapid & standardized annotations of bacterial genomes & #plasmids github.com/oschwengers/ba… more details 👇 1/n
Bakta annotates bacterial genomes & plasmids in minutes comparable to Prokka (kudos @torstenseemann) adding distinct features: annotation of small proteins, alignment-free protein identification, a taxon-independent DB, ample Dbxrefs, JSON output, utilizing complete replicons 2/n
In addition to standard feature types, Bakta also detects and annotates known small proteins (#sORF) (<30 aa) which are often overlooked b/c they’re not called by gene prediction tools, e.g. Prodigal. They play vital roles in virulence, stress response, gene regulation, etc. 3/n
