Dan Quintana Profile picture
Sep 28, 2020 33 tweets 11 min read Read on X
If you’re an academic you need a website so that people can easily find info about your research and publications. Here’s how to make your own website for free in around an hour [UPDATED 2020 THREAD]
This is the third annual edition of my thread tutorial. The big change for this year is that now I use Visual Studio Code (@code) instead of Rstudio. When I first starting making this updated tutorial with Rstudio I kept running into problems, so that's why I changed.
The other big change is that the website files will be hosted on @github, which makes version control and updating your site much easier. The actual site will be hosted on @netlify, and you'll make your site using the @wowchemy template
So before you begin, get a @github and @netlify account, and download @code code.visualstudio.com/download

Now let's begin!
Go to the @wowchemy site, click on "Get started" and then "Create your resume or academic site now with Github", and then "Connect to Github". You may need to grant Netlify access to Github.
Netlify will then deploy your website and put it online, which will take about a minute or so. Click on the link to load your website
You can also change the name of your website to something more meaningful. It's also possible to use a domain name that you own, if you like.
Within Github, your website will be hosted on a "repository", which is just another name for a folder and also known as a "repo", for short. Go to your repository page as you'll need the URL to this page soon.
Now open up Visual Studio Code. If you've used RStudio before, you should be fairly comfortable with the set up. But if you haven't, it's fairly intuitive.
First thing you will need to do is download and install two extensions. Click on the Extensions menu, search for "Github Pull Requests and Issues", and then install this. This will allow you to interface with Github. You may be asked to give VSC access to your Github repos
Next, install "Browser Preview". This will provide a real-time preview of your website as you edit it.
Now we're going to clone our repository to Visual Studio Code. Click on the "Source Control" tab, then "Clone repository", and then paste in the URL of your Github repo. You will also have to assign a folder on your system for your local files.
Your files are now in Visual Studio Code. Most of the files that you're going to be working with are in the "config" and "content" folders.
Before creating your site within Visual Studio Code, you will need to install "Hugo Extended" and its prerequisites, following the instructions here depending on your operating system wowchemy.com/docs/install-l…
Now open up a new terminal window in Visual Studio Code by clicking on the "Terminal menu" and then "New Terminal". Type in the following command in the Terminal window: hugo server
When you run this for the first time, you might be prompted to install "Go". You download this programming language from here golang.org/dl/
Now open up the Browser Preview extension you previously installed, by clicking on its button on the left. Then, paste in the local host address that you are given into the browser preview. This will load your page.
The first thing you're going to do is to change the name and picture. Navigate to "content/authors/admin", and then open up the "_index.md" file. Here you change your display name, role, affiliation, short bio, and research interests.
When you change any details and save the file, your preview will automatically update.
To change the profile picture, just replace the "avatar.jpg" file in the "content/authors/admin" folder with your profile picture of choice using the same file name. As soon as you do this, your site preview will automatically update.
The main page is made up of a series of widgets, which are found in the "home" folder and you can edit or delete. To delete any widget, open up a file and change the "active" command into false. First, you're going to delete the demo widget (i.e., the green section at the top)
One of the most important elements of your website is your publication list. There's a SUPER easy way to import all you publications via a bibtex file. Just export a list of your pubs from your citation manager as a .bib file, and then put this file in your main website folder.
You'll need to download

1. The 'academic admin' tool wowchemy.com/docs/managing-…

2. Python 3 realpython.com/installing-pyt…
Assuming you've installed Python 3, bring up a Terminal window in Visual Studio Code, and then type in the following command: pip3 install -U academic
You should already already in your website folder in Terminal, check by with this command in terminal: ls
Terminal should return something like this:
Now use the following command, which will create individual pages for each of your publications, including the path to your .bib file, which you put in your website folder earlier: academic import --bibtex <path_to_your/publications.bib>
Here, I called the file "pubs.bib". If you're using a Mac, you can drag your file into terminal and it will paste the file path.
You can open up each file, modify if necessary, and check how it looks on your webpage
Now you're ready to update your website! Click on the "Source control" button, which should have a number that reflects how many changes you've made. Add a small message and commit on 'master', as instructed in the text box. Then push the changes to your Github page
These changes are now reflected on the published page, which you can check out here: pia-platypus.netlify.app
Just posted a blogpost version of this thread on how to make a personal academic website for free dsquintana.blog/create-an-acad…
Help me improve my blogpost—was there any section of this thread or post that was unclear or where you got stuck?

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More from @dsquintana

Feb 14
“Underpowered to detect what?” should be the first question to anyone who says a “study” is underpowered journals.sagepub.com/doi/10.1177/10…
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And here's your annual reminder that a "study" cannot be underpowered, but rather, a *design and test combination* can be underpowered for detecting hypothetical effect sizes of interest towardsdatascience.com/why-you-should…
If you want to determine the range of hypothetical effect sizes a that given field can reliably detect (and reject), here's a demo with #Rstats code sciencedirect.com/science/articl…
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Read 4 tweets
Mar 30, 2023
My guide to calculating study-level statistical power for meta-analyses using the 'metameta' #Rstats package and web app is out now in AMPPS 🔓 doi.org/10.1177/251524…

Here's how this tool can be used for your next meta-analysis OR for re-analysing published meta-analyses 🧵
There's been a lot of talk recently about the quality of studies that are included in meta-analyses—how useful is a meta-analysis if it's just made up of studies with low evidential value?
But determining the evidential value of studies can be hard. Common approaches for looking at study quality or risk of bias tend to be quite subjective. You're not likely to get the same conclusions from different authors. These tasks can also be quite time consuming.
Read 29 tweets
Jun 28, 2022
Lots of replies and quote retweets to this paper along the lines of, “LoL PSyChoLoGy”, so here are two thoughts on this…

1. I’m glad the field is generally mature enough to actually recognize there’s a problem. Not all fields (or psychology subfields) can say this
When I was an undergraduate psychology student there was no discussion of this—all the studies we were taught just worked 🪄
Reproducibility concerns only started becoming a more mainstream idea during my PhD, but this still wasn’t discussed much.
Read 7 tweets
Jun 24, 2022
“Nearly 100% of published studies… confirm the initial hypothesis. This is an amazing accomplishment given the complexity of the human mind and human behaviour. Somehow, as psychological scientists, we always find the expected result; we always win!” royalsocietypublishing.org/doi/10.1098/rs… Image
One thing I want to add: the psychological sciences need to broadly adopt practices that help us determine when we're wrong. The standard NHST p-value approach cannot be used to provide support for absence of an effect. This paper provides two solutions academic.oup.com/psychsocgeront…
Strong auxiliary assumptions are also required for falsifying hypotheses
Read 5 tweets
Oct 24, 2021
Here are the answers for yesterday’s mini-quiz and a little info on each of these psych studies 🧵
1. The bottomless soup bowl study 🍜🍜🍜🍜

Participants who ate soup from bowls that were refillable, unbeknownst to them, ate 73% more soup than those eating from normal bowls pubmed.ncbi.nlm.nih.gov/15761167/

Here is Brian Wansink with the refillable bowl ⬇️ Image
This study has been cited over 700 times and won an Ig Nobel prize, but the numbers reported in the paper are… suspicious jamesheathers.medium.com/sprite-case-st… and there are doubts this study ever actually happened statmodeling.stat.columbia.edu/2019/08/20/did…
Read 20 tweets
Apr 23, 2021
New preprint 🎉

Oxytocin receptor (OXTR) expression patterns in the brain across development osf.io/j3b5d/

Here we identify OXTR gene expression patterns across the lifespan along with gene-gene co-expression patterns and potential health implications

[THREAD]
So, let's begin with some background.

As well as being an oxytocin researcher I'm also a meta-scientist, which means that a lot of my work on improving research methods is focused on improving oxytocin research (that's what got me into meta-science in the first place)
Earlier this year, we published a paper, led by @fuyu00, in which we proposed that three things are required to improving the precision of intranasal oxytocin research: Improved methods, reproducibility, and theory.

Read the article here: rdcu.be/cjeok
Read 30 tweets

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