A note for I think journalists about the "377 deaths under 60" being the cost for COVID for the UK. This a bonkers positioning statement and is definitely not something trying to shed light on the extremely nasty problem we have in front of us.
The main thing is that what has been aimed for throughout, from the start, is not having a catastrophic capacity demand on the NHS (or any healthcare service). Simply healthcare services cannot cope at some point and then, straightforwardly, many people die, for many reasons.
In this situation, one can aim to do this more rationally ("triage") or not (obviously, more rationally, better) but there is no magic bullet, or emergency button to press. Field hospitals are useful, but they have to be staffed. Healthcare capacity is a fragile thing.
So - the counterfactual here is "what would have happened if the NHS capacity limits were seriously breached" - and many people would have died or had serious disease, both from COVID and other things - and if we don't navigate Q1 2021 well this still *could* happen.
At this point, for me, the argument is settled, but just to have the other arguments lined up (a) there are plenty of very healthy and happy 60+ year olds with plenty of good years left in them; very very sadly some of these people have died from COVID.
(b) there is way more than death sadly as an outcome - spending months in hospital, in an ICU, is horrible and there is a complex disease (probably a collection of diseases, or a spectrum, etc) labelled LongCOVID, interestingly analogous to CFS/ME which is triggered by this virus
LongCOVID clearly happens with an earlier age range and at least more even sex bias. It is all a bit murky (at least from my perspective) and I suspect will take a while to work out (incidence, symptoms, spectrum criteria, treatments, outcomes).
In the extremely cold hearted, but necessary world of weighing lives for health economics (QALYs and the such) one can at least place into some framework "end of life cancer drugs" with "death from COVID" with "LongCOVID".
In these frameworks, it is likely that the long term debilitating diseases, such as LongCOVID, have a big impact. So every person prevented to have gotten LongCOVID is a win, just as much as every unnecessary death avoided.
(c) We would have been in a very different place if vaccines did not work. If vaccines did not work then we would be looking at managing the kinetics of healthcare delivery whilst trying to minimise QALYs lost in the system - hideous to think about and super complex. BUT>>
<<This is not the case. At least 3 vaccines work. There is every reasons to think they will work against new strains (as they have been trialed against a mixture anyway); in the absolute worst case scenario, as the 3 first vaccines are engineered, one can match them to the strain
So - now - we can prevent deaths and LongCOVID via vaccines (hurray! go for it!) and *all* of the health economics plus real economics point in the same direction - vaccinate as fast as possible.
In the UK we have an extra spectre of the new strain being that much more transmissible (I suspect other countries also, but they need to work out where they are) but I actually don't think this changes the strategy (vaccinate as fast as possible) but >>
It will change tactics about NPIs and TTI efficiency (though one should *never leave* any TTI efficiency on the table!) in Q1 2021. Basically, we will need more NPIs, perhaps a lot more; but this is now tactics to buy time for the strategic goal of vaccination.
I was musing about what commentators should kick up a fuss about - it is not the case that everything is unchallengeable or settled. So - here are some topics more worthy of debate:
1. How does economic recovery work across 2021 given that we do expect post COVID working / holiday practices changing? We need to think hard about this and lots of straightforward politics here to my naive eyes
2. COVID/ SARS_CoV_2 is a global not national problem. How do we get the whole planet into a happy place here - how do we do vaccinations, trade and travel during 2021?
3. A question I (and @emblebi) is interested in is how to do on-going global surveillance of SARS_CoV_2 and new pathogens - both during vaccination and also for the future - we should never, ever allow another virus to get the jump on us like this again.
(As all viruses have nucleic acids genomes, we can survey things without knowing what we're looking for; plenty of options here for us to get a jump on new viruses rather than the other way around)
4. A rather meta question, but nevertheless important; the UK has got to learn from the pandemic in terms of crisis response. The UK did some things badly (March, Care homes) and some things well (RECOVERY trial, let's hope vaccination). What do we learn from this - and how?
The rather "wissenschaft" question of how one sets up a system which actually learns from this I find interesting. Not my expertise.
The "scorecard" nature of thinking about this (could have done X better) is a necessary starting point, but this is not the endpoint, and there will be a huge picking over of decisions - sort of science/health/economics policy slo-mo VAR
Individuals will be involved in this. Some will have made bad decisions with good rationales; some bad decisions will have happened because no one even made a decision; operationalising decisions well will be I think a key issue; some people might have been negligent.
The meta-question is how to structure a discussion that gets through this and then gets to the "what structures do we need in crisis and with what types of people" and try to abstract things for the next time (as ... there will be a next time) and it wont be identical to this
There are other questions to get stuck into. Of course, I get that journalists and commentators can just rage - it sucks - this is definitely not something anyone wanted to happen. But I think rage is best employed to do something useful.
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Some COVID thoughts on this bright, beautiful Christmas Eve morning in London.
Context: I am an expert in genetics and computational biology; I know and chit-chat with experts in viral phylogeny, infectious epidemiology, immunology + testing. I have a COI that I am a consultant to Oxford Nanopore that make a COVID test. I am also on the AZ vaccine trial
Reminder: SARS_CoV_2 is an infectious virus which causes a nasty disease in a subset of people, often leading to death. If we let the virus go through the population not only would many people get this disease, but also healthcare systems would be overwhelmed.
Final thread in a series of 3 - what does this new variant mean for the next stages of the pandemic?
So - first off, if the biology has changed, we need to check all the biological and clinical parameters, some of them urgently. Most obviously do the vaccines work against them. There are good reasons to think this is v. likely which I outlined yesterday.
Briefly they are 1. The vaccine trials all happened with a mixture of different variants circulating (as happens everywhere - there's far more than this B.1.1.7 strain circulating). The fact all 3 work in this mixture is reassuring.
(This is super-rapid pre-print on virological.org - other people will pick over this no doubt - but the openness of the data and quality of analysis from this group means this is super solid, and any updates on discussion likely to happen fast)
So - that was quite a twitter/media day for me, and welcome to my new followers; 3 threads coming up - introducing myself, explaining my background and COIs (this one); technical aspects of the new strain from my vantage; commentary on what is means for the future
(for the people who know me, skip the rest of this thread!)
A brief tweet portrait of me; I am deputy director general of @embl and co-direct (with Rolf Apweiler, not on twitter) one it's six sites, @emblebi which is based just south of Cambridge, UK.
New SARS_CoV_2 virus strain update. TL;DR - there is something to understand more, and it looks like the virus has tweaked its biology at least on transmissibility; Public health, scientists + surveillance systems are on it.
What do we know? Like all viruses SARS_CoV_2 changes - like typos in a manuscript that is endlessly retyped - and in fact this virus has a pretty pedestrian rate of typos. One version ("variant" or "strain") found in the south east England has a number of interesting properties
COVID in Europe - my perspective this bright, sunny day in London. As ever, the main group I feel I am talking to here are journalists, who have to write about COVID because... it effects our lives so much.
Context: I am an expert in genetics/computational biology; I know of experts in viral evolution, clinical trials, immunology, infectious epidemiology and chit-chat with them regularly. I have a COI that I am long standing consultant to Oxford Nanopore which makes a COVID test.
Reminder: SARS_CoV_2 is an infectious human virus which causes a nasty disease in a subset of people; some people die (even with the best medical treatment); others suffer a long term disease we are trying to understand.