Some recent credible studies from the UK suggest that the variant B.1.1.7 which was first detected there is not only more transmissible but associated with greater severity, measured by deaths. A thread 1/n
The studies on which this is based are summarized in this document. Notably, it is not founded on one study, but several. They incorporate different data, methods and different biases and they are all imperfect, but they point in the same direction. assets.publishing.service.gov.uk/government/upl… 2/n
The upshot is that people infected with B.1.1.7 are about one third more likely to die than similar people infected with the pre-existing viral lineages. There is a LOT of uncertainty around that number. For a lot of reasons. But some increase (even if small) seems legit 3/n
This is consistent with early statements that there was not a large change in virulence. You would not expect to detect a 30% increase from the data available early on (I seem to remember saying there might be some change but not enough to be detected by the current data) 4/n
Of course, if a large number become infected, then a 30% increase really really matters in terms of the absolute numbers of deaths. Instead of the 400k + deaths in the US, we would have 520k+ were they due to a virus like this (<-toy example please don't quote out of context) 5/n
More confusing what is meant for hospitalizations, especially because of lags in data reporting. I think we will know more soon. But I think it is reasonable to think it increases the probability of severe disease in general, rather than death conditional on severe disease 6/n
(which has its own impact on healthcare. One of the more shortsighted elements of pandemic reporting is the emphasis on deaths. Hospitalizations, and the long term effects on those hospitalized and indeed not hospitalized matter too) cidrap.umn.edu/news-perspecti… 7/n
We should recall that for most, the risk of severe disease, let alone death is not high. The reason to avoid infection is to break transmission chains and avoid the risk of the long term consequences of infection. Linking to this again, but worth it cidrap.umn.edu/news-perspecti… 8/n
There are some things to shake out. I think that the quite rapid escalation on healthcare in December in the South East of England is not fully accounted for in this, although people have tried. I think that remains to be fully teased out. 9/n
Studies like this are hard to design. Ideally you compare like with like, but how do you do that in a situation where exposure to a virus is changing week by week and healthcare is being compromised at the same time as a consequence 10/n
Overall though I think this is more than enough reason to sit up and take notice – this doesn’t need to be more virulent to be worrying. And if it *is* more virulent, even a bit, that’s a very nasty cherry on top. 11/end

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More from @BillHanage

16 Jan
My announcement that I was running with a mask got a LOT of comment (from all sides) earlier. It’s in response to changes in the state of the pandemic and the transmissibility of the virus. Worth unpacking 1/goodness knows
First I posted the photo after a couple of interviews this week in which mask use outside was discussed in the context of surging infections due to the variant B.1.1.7. Here's one
And then this with RTE where were talked about mask use in the context of the situation in the Republic of Ireland, where cases are surging. I commented that I run with a mask. Hence the tweet

Read 13 tweets
15 Jan
I’ve thought long and hard about this. There is a constellation of circumstantial evidence around the most recently identified variant P.1, and what has been happening in Manaus, Brazil which makes me very seriously concerned. A thread 🧵
First Manaus has already been very hard hit by the pandemic. News reports in earlier stages told of rushed burials and bodies piling up reuters.com/article/us-hea…
The crucial thing was the rapid rates of transmission, not really mitigated by ‘flattening the curve’ any. total per capita mortality was not as high as might be expected elsewhere, but only because the age structure of the population in Manaus skews young citypopulation.de/en/brazil/amaz…
Read 13 tweets
14 Jan
The UK has other problems for the next month or so, but this decision in my opinion hugely misses the point of rapid testing for schools or other places 1/n theguardian.com/world/2021/jan…
Imagine you only detect 75% of true cases of infection. Well, you just cut the risk of transmission in school by 75% and that's not nothing. What about the remaining 25%? Use masks as well. Anything that makes it through the rapid test now has to beat the mask 2/n
Two masks actually, if everyone is using them. This article with @j_g_allen and @jenkinshelen explains why this is important 3/n theguardian.com/commentisfree/…
Read 9 tweets
13 Jan
There is a new ‘variant’ clearly identified today, P.1. And it is worth saying a little about what we have learned about it, and from the variants we have identified so far virological.org/t/genomic-char… 1/quite_a_few
First these are not simple ‘mutants’. Mutations happen all the time and most mean nothing much and either persist at low levels or are removed by selection. The variants are characterized by *multiple* mutations – one of the reasons we call them variants and not mutants 2/n
Those multiple mutations are in parts of the genomes that are not exactly the same, but they overlap to a really pretty marked degree (esp the receptor binding domain). This looks like convergent evolution in which different lineages find the same solution by different routes 3/n
Read 15 tweets
9 Jan
It has been a long tiring and, in many ways, terrifying week in the US. The events in DC have nevertheless obscured the growing public health crisis, which even with vaccines available can be expected to get WORSE over the short term - a thread
Where are we right now? Daily deaths cleared 4000 this week. That will get worse. How do I know? Because the deaths are the results of infections in the past, and infections got worse in the last few weeks. I'm so sorry, but it is coming
The amounts of infection now are so high, and the comparative vaccination rates so low, that we have to be prepared for a coming surge into healthcare across the nation. It is already going to be bad enough. It might well be worse given the threat of more transmissible variants
Read 10 tweets
5 Jan
Everyone who thinks I just offer snark and the occasional bit of science. Let me please remind you how seriously I take this. People too close to me have died, too many of them. Too many have suffered the chronic nightmare of long covid
many more have treated the sick, and some have become infected. Some have been severely ill. Some still are
folks need to stop denying gravity and start seeing what is before their eyes. This virus is dangerous to *enough* that we need to take strong action to slow it down
Read 4 tweets

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