DNA is not a blueprint, a common but bad metaphor.
DNA serves as a set of internal instructions to tell a cell what do I do given these inputs from my local environment.
2/n
As if a pile bricks interacting together formed a house spontaneously.
3/n
Distributed agents engage in 'local' interactions and behaviours, order forms 'globally'.
4/n
Consider the example of the micelle
(Also think about attractor dynamics)
5/n
One way to think about a pattern is if something is compressible then there is a pattern.
A pattern is some kind of redundancy of information.
Mutual information is shared by components/elements by virtue of them being part of a pattern.
6/n
If something converges it can almost be treated as one dimensional.
But higher dimensional representations are more faithful.
7/n
"We have no choice but to develop a whole new kind of intuition" - Stephen Wolfram 'A New Kind of Science'
8/n
Think about what is the possibility space of all alternatives.
You can try them and see what they do.
9/n
Again it's hard to be random intentionally but you can try.
10/n
Emergent behaviour is not baked in any explicit way into the rules.
The rules are the rules, then these behaviours and patterns emerge out of the rules without ever being explicitly coded anywhere, only implicitly.
11/n
Coarsening is where the smallest details become larger, and the finest resolution of the pattern goes up as the system evolves over time.
12/n
Out of elementary cellular automata you can get something as rich and powerful as all our computers as Rule 110 demonstrates.
A small parameter change can cause a massive regime change.
18/n
A phase transition can always sneak up on you.
19/n
Trying to look at a system empirically doing statistics you can miss a jump easily.
People apply linear regression and get it completely wrong all the time.
20/n
They don't know what they don't know.
21/n
To form a pattern for things to not disintegrate into maximum entropy/disorder you need your system to be open to flows of energy and matter.
Isolated systems disintegrate.
22/n
We see pattern forming a lot in biology but it actually doesn't depend on biology explicitly. It only depends on being an open system where order can form.
(referred to as far from equilibrium systems, as opposed to equilibrium systems/isolated)
23/n
Think of physical systems like sand & water or stripes on an animal.
24/n
Both are examples of 'Long-range inhibition, local activation' - another bottom-up pattern where each unit/cell/agent follow a rule to do the same as its nearest neighbours & the opposite of its distant neighbours
At a certain point in time it has to have a paradigm shift or it doesn't work anymore:
Different materials, different, tools, etc. - just different
45/n
Something has got to give something has got to be different.
A whale can grow so large compared to elephant because it is in (and has to be in) the ocean.
46/n
Instead maybe try a smallish system then, run a new smallish system in a similar way e.g. cells
Sometimes duplication allows things to evolve differently.
47/n
There are tools that people bring to bear that become selective mechanisms over the possible objects of study and so we get this hugely biased sample of what we consider normal/regular/typical.
2/n