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May 6, 2021 12 tweets 6 min read Read on X
It is Thursday, must be time for a #DBIOTweetorial, brought to you by @NavishWadhwa and Yuhai Tu. We will drop in the tweets over the next hour or so. Counting on you to comment, ask questions, have discussions…let’s show the world that biophysicists don’t hold back. #EngageDBIO
Gather up, friends. Did you see the internet-famous structure of the bacterial flagellar motor? Did it make you want to know more? Then buckle up, we are about to take a deep dive into nature’s most marvelous bio-nanomachine.
First, a quick recap. Many bacteria swim by rotating helical flagella. Rotation of these flagella is powered by a highly complex bio-nanomachine, the flagellar motor. It is a full-on electric motor, complete with a stator, a rotor, a driveshaft, a universal joint, and bushings.
You may have heard about chemotaxis, how in many bacteria, the motor switches its direction of rotation to help the cell respond to chemical stimuli. Turns out this motor has many more neat tricks up its sleeve, many of which have only been discovered in recent years.
The field has been studying the motor for decades, but believe it or not, we did not know its mechanism of torque-generation. That is, until the advent of cryo-EM. Thanks to cryo-EM technology, we now have near-complete structures of the stator complexes that generate torque.
And boy, we were in for a surprise. This tiny rotary motor is powered by an even tinier rotary motor. The stator complexes are miniature rotary motors themselves. A pentamer of MotA rotates around a dimer of MotB, coupled with the passage of protons through the complex.
How, then, does this motor switch its direction of rotation? That turns out to be another elegant mechanism. During the switch, the C-ring (part of that rotor that engages with the stator) undergoes a dramatic conformational change that alters its interaction with the stator.
The C-ring changes its size during the switch! In CCW mode, the stator units engage the *outside* of the C-ring , so their CW rotation drives the motor CCW. After the switch, the stator units now engage the *inside* of the C-ring, and drive the motor CW.
As if all of this was not enough, the motor is also able to perform some pretty impressive shapeshifting. It constantly adds or removes subunits, which allows it to dynamically adapt to chemical or mechanical changes in the environment.
For example, if the load on the flagellum goes up, the motor adds torque-generating stator units to drive up its output. And when the load goes down, it removes stator units, decreasing its output and conserving energy at the same time.
If you would like to learn more, we have collected some resources and references here: navishwadhwa.com/blog/flagellar…. Do check them out and let us know if you have any questions. We remain enamored by this beautiful molecular machine and we were glad to spread the joy today.
Thanks to the awesome #EngageDBIO team for letting us take over @APSDbio today. Keep supporting their work by liking, retweeting, and commenting on the great content they bring to our community.

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More from @ApsDbio

Oct 7, 2021
Hello and welcome to this week’s #DBIOTweetorial by Prof. Madhusudhan Venkadesan @v_madhu. Let’s go!
Feet and fins are quite different in their anatomy. But both have to be stiff enough to withstand the forces of propulsion. Are there deeper connections between them?

Paper: dx.doi.org/10.1038/nature…
Video:
All land vertebrates, or tetrapods, evolved from aquatic ancestors over 370 million years ago. So we and all land vertebrates are fish, in a manner of speaking!

Limbs evolved from fins, but the earliest tetrapod probably used a fin to move on land.

Ref: jstor.org/stable/j.ctt16…
Read 13 tweets
Aug 5, 2021
Hello, it's a gorgeous Thursday! Time for a #DBIOTweetorial. A special edition this week — an inaugural *Editweetorial* by your host today, Prof. Bill Bialek @wbialek. #DBIOEditweetorial Image
Biological systems are complicated. If we try to make “realistic” models we are led into a forest of parameters. If we are going to have a theoretical physicist’s understanding of life, we have to find principles that cut through this complexity.
Maybe a #DBIOEditweetorial provides just enough space to summarize different strategies in the search for principles. Links are to papers that illustrate these ideas, and of course are just a sampling. Please respond with your own favorites.
Read 12 tweets
Jun 17, 2021
Have you seen images of bacteria and wondered, “How do they form such strange shapes?” or “Why do they all look so different?” Join us for today's #DBIOTweetorial as we dive into how and why bacteria adopt the shapes they do! #EngageDBIO @goleylab @jordanmbarrows
As Kevin Young eloquently put it, “To be brutally honest, few people care that bacteria have different shapes. Which is a shame, because the bacteria seem to care very much.” Check out how diverse bacterial shapes can be! tinyurl.com/6d93vce4 tinyurl.com/uvbtwvs3
Bacterial shape is largely determined by the peptidoglycan (PG) cell wall, a large macromolecule that surrounds cells and provides structure and support. PG is necessary to maintain cell shape - cells burst when treated with drugs that target PG!
tinyurl.com/m4dys6hb
Read 12 tweets
Jun 10, 2021
Are the screaming BroodX cicadas driving you nuts? Wonder how such tiny insects even make such a racket? You’ve come to the right place! I study how insects make and hear sound. By the end of this I hope I can show what biophysical marvels they are! #DBIOTweetorial @NatashaMhatre
So what is sound? It’s a disturbance in a medium, generated by a moving object. In this cool gif, by @drussellpsu, you can you see a grey bar moving back and forth within a pipe. The air in the pipe is pushed around, and the disturbance within it (sound) travels through the air.
So anything that moves makes a sound?

Yup, pretty much! The world is full of it: the wind shakes leaves, they rustle; tires vibrate because of friction, and they rumble.

But how ‘loud’ the sound is depends on quite a few things!

frontiersin.org/articles/10.33…
Read 12 tweets
Jun 3, 2021
It's #DBIOtweetorial time, with your host @gibbological from @isbsci. Today, you'll get some facts about the ~10^13 microbes that call your gut home. By the end, I hope that you'll see yourself as much more than a mere human. You are an ecosystem! #EngageDBIO #microbiome 💩🦠🧑‍🔬
In the womb, we are sterile (obgyn.onlinelibrary.wiley.com/doi/abs/10.111…). At birth, our mothers (and surrounding environment) act as our 'sour-dough starter culture,' inoculating us with hundreds-to-thousands of species. The exact composition of this 'microbiome' is as unique to us as our genome.
Topologically speaking, humans are doughnuts. The entire outside of this doughnut is *covered* in microbes (mostly bacteria). Most of our microbes live in the colon. There are about 3*10^13 human cells and 4*10^13 bacterial cells in the body (doi.org/10.1371/journa…).
Read 12 tweets
May 27, 2021
It's #DBIOtweetorial time! Your host is Saad Bhamla @BhamlaLab. Today we'll learn about 10 ultrafast movements in organisms - from single cells to multicellular beasts. We hope to get you thinking engg+bio+physics of extreme movements.
#EngageDBIO #UltrafastOrganisms.
Contrary to common perception, cheetahs and falcons are not the fastest animals. Mantis shrimps for example can use a saddle-shaped spring to hammer at ~100,000 m/s^2. This is so blazing fast, it cavitates surrounding fluid. nature.com/articles/42881…
Trap jaw ants use their spring-loaded jaws to jump at faster acceleration of 10^6 m/s^2 in 0.06 ms. Faster than the blink of an eye or a bullet from a gun !! How to build robots at this scale and speed remains an open challenge. pnas.org/content/103/34…
Read 11 tweets

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