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May 13, 2021 12 tweets 5 min read Read on X
Hello, it’s a gorgeous Thursday! Time for a #DBIOtweetorial by Eleni Katifori, commissioned by the awesome folks at #engageDBIO! Let's get sciencing!
Large organisms cannot survive without a circulatory system. Diffusion is too slow to provide enough nutrients. For this reason, plants, animals and fungi have evolved complex irrigation systems.
Circulatory systems roughly follow some simple design principles. They are composed of wide vessels, “highways” for long distance transport, and smaller, distributary channels, which do the actual delivery of the load. Similar function can result in similar design!
Flow networks in biology can be approximated by resistor networks, like the ones we learn in Physics 101. The voltage is like the pressure, the electric current is like a fluidic current, and the electric resistance is the fluidic resistance, as derived by Poisseuille’ law.
The resistor models are quite successful! However, to model real networks, we need more. We need to store fluid (capacitors), to account for inertia (inductors), to use valves (diodes), and to consider other nonlinearities.
With capacitors and inductors, we can have a propagating energy pulse like in transmission lines. The amplitude of the pulse is attenuated as it moves, like our own pulse that disappears by the time it reaches the capillaries.
Biological flow networks are under huge evolutionary pressure to perform efficiently their tasks, while keeping building costs low. Murray’s law predicts the scaling law by minimizing the energy loss due to viscous forces.
But how do organisms build their optimal (or near optimal) network architectures? There is no grand design: they build and adapt their networks based on local rules that modify the link strength based on local information.
These local adaptation rules are very powerful! Depending on the adaptation parameters, the networks can form to optimally perform a broad array of functions, and can adapt when conditions are changing. This happens all the time in our circulation.
What are other principles that networks might care to optimize? They can be uniformity of nutrient delivery, minimization of average pressure drop in the network, robustness, time it takes to deliver the load and more. There's a lot of very interesting recent work exploring this!
Da Vinci noticed the many similarities between human circulation and rivers. The study of vascular systems can teach us a lot about other flow networks, natural or human-made!
Thanks to the fantastic #EngageDBIO team for commissioning this #DBIOTweetorial and takeover of @ApsDbio today, and for the great content they bring to our community! Have fun sciencing!

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More from @ApsDbio

Oct 7, 2021
Hello and welcome to this week’s #DBIOTweetorial by Prof. Madhusudhan Venkadesan @v_madhu. Let’s go!
Feet and fins are quite different in their anatomy. But both have to be stiff enough to withstand the forces of propulsion. Are there deeper connections between them?

Paper: dx.doi.org/10.1038/nature…
Video:
All land vertebrates, or tetrapods, evolved from aquatic ancestors over 370 million years ago. So we and all land vertebrates are fish, in a manner of speaking!

Limbs evolved from fins, but the earliest tetrapod probably used a fin to move on land.

Ref: jstor.org/stable/j.ctt16…
Read 13 tweets
Aug 5, 2021
Hello, it's a gorgeous Thursday! Time for a #DBIOTweetorial. A special edition this week — an inaugural *Editweetorial* by your host today, Prof. Bill Bialek @wbialek. #DBIOEditweetorial Image
Biological systems are complicated. If we try to make “realistic” models we are led into a forest of parameters. If we are going to have a theoretical physicist’s understanding of life, we have to find principles that cut through this complexity.
Maybe a #DBIOEditweetorial provides just enough space to summarize different strategies in the search for principles. Links are to papers that illustrate these ideas, and of course are just a sampling. Please respond with your own favorites.
Read 12 tweets
Jun 17, 2021
Have you seen images of bacteria and wondered, “How do they form such strange shapes?” or “Why do they all look so different?” Join us for today's #DBIOTweetorial as we dive into how and why bacteria adopt the shapes they do! #EngageDBIO @goleylab @jordanmbarrows
As Kevin Young eloquently put it, “To be brutally honest, few people care that bacteria have different shapes. Which is a shame, because the bacteria seem to care very much.” Check out how diverse bacterial shapes can be! tinyurl.com/6d93vce4 tinyurl.com/uvbtwvs3
Bacterial shape is largely determined by the peptidoglycan (PG) cell wall, a large macromolecule that surrounds cells and provides structure and support. PG is necessary to maintain cell shape - cells burst when treated with drugs that target PG!
tinyurl.com/m4dys6hb
Read 12 tweets
Jun 10, 2021
Are the screaming BroodX cicadas driving you nuts? Wonder how such tiny insects even make such a racket? You’ve come to the right place! I study how insects make and hear sound. By the end of this I hope I can show what biophysical marvels they are! #DBIOTweetorial @NatashaMhatre
So what is sound? It’s a disturbance in a medium, generated by a moving object. In this cool gif, by @drussellpsu, you can you see a grey bar moving back and forth within a pipe. The air in the pipe is pushed around, and the disturbance within it (sound) travels through the air.
So anything that moves makes a sound?

Yup, pretty much! The world is full of it: the wind shakes leaves, they rustle; tires vibrate because of friction, and they rumble.

But how ‘loud’ the sound is depends on quite a few things!

frontiersin.org/articles/10.33…
Read 12 tweets
Jun 3, 2021
It's #DBIOtweetorial time, with your host @gibbological from @isbsci. Today, you'll get some facts about the ~10^13 microbes that call your gut home. By the end, I hope that you'll see yourself as much more than a mere human. You are an ecosystem! #EngageDBIO #microbiome 💩🦠🧑‍🔬
In the womb, we are sterile (obgyn.onlinelibrary.wiley.com/doi/abs/10.111…). At birth, our mothers (and surrounding environment) act as our 'sour-dough starter culture,' inoculating us with hundreds-to-thousands of species. The exact composition of this 'microbiome' is as unique to us as our genome.
Topologically speaking, humans are doughnuts. The entire outside of this doughnut is *covered* in microbes (mostly bacteria). Most of our microbes live in the colon. There are about 3*10^13 human cells and 4*10^13 bacterial cells in the body (doi.org/10.1371/journa…).
Read 12 tweets
May 27, 2021
It's #DBIOtweetorial time! Your host is Saad Bhamla @BhamlaLab. Today we'll learn about 10 ultrafast movements in organisms - from single cells to multicellular beasts. We hope to get you thinking engg+bio+physics of extreme movements.
#EngageDBIO #UltrafastOrganisms.
Contrary to common perception, cheetahs and falcons are not the fastest animals. Mantis shrimps for example can use a saddle-shaped spring to hammer at ~100,000 m/s^2. This is so blazing fast, it cavitates surrounding fluid. nature.com/articles/42881…
Trap jaw ants use their spring-loaded jaws to jump at faster acceleration of 10^6 m/s^2 in 0.06 ms. Faster than the blink of an eye or a bullet from a gun !! How to build robots at this scale and speed remains an open challenge. pnas.org/content/103/34…
Read 11 tweets

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