Watching Delta variant take off across world

What will it take to control it?

Vaccines & public health measures of course

Here in US, we're abandoning PH measures (masks, distancing)

So vaccines

How much?

My estimate: 60% of Americans fully vaccinated

We're at 46%

Thread
So why is 60% a reasonable estimate?

Well, lets begin with R0 of Delta

Best credible estimates suggest its around 5

If you had no public health measures, need 80% population immunity to stop spread of the virus

Immunity comes from two sources:

Vaccines
Prior infections

2/n
If 46% have been fully vaccinated,

means 54% not yet fully vaccinated (math!)

But (and this is surprisingly contentious), folks with prior infection obviously have some degree of immunity

Let’s assume they have as much immunity as vaccinated people (I'm not sure they do)

3/n
And while vaccinated (and previously infected) folks can have breakthroughs

Let's assume they don’t transmit to others (largely true)

(I'll go back and check my assumptions at end)

So how many unvaccinated folks have been previously infected?

Best guess for US? 36.5%
Seems real precise. Did I just make that up? No

CDC estimates that by mid-April, 114 Million Americans had been infected and recovered

In last 2 months, we’ve probably added about 6M more

So that’s 120M infected/recovered or 36.5% of the US population

5/10
I'm going to assume that previously infected folks got vaccinated at same rate as others

You can make case on both sides

So math:

330M Americans - 153M fully vax = 176M not fully vax * 36.5% natural immunity

Means 64 million unvaccinated people with natural immunity

6/10
Add 64M (unvaxed, immunity ) to 153M fully vaxed

217 million people immune

That’s 66% of the population!

But not anywhere near 80%

So we need to vaccinate another 14%

Another 46M people

If we vaccinate another 46M folks, we'll be at 60% of the population fully vaxxed

7/10
So that should be our target – 60% of Americans fully vaccinated

OK fine, that's math

But what about reality?

Israel at 59%. Why wasn't that enough?

Partly b/c I believe they have less natural immunity (likely had fewer infections than US)

So they need higher threshold

8/10
So how do we think about this?

First, we have 26M Americans who've gotten one shot but not yet 2nd

Half of them are in 3-4 week waiting period and will

Which will bump us to 166M fully vaxxed

Another 13M missed 2nd shot. If they get it,

we'll be 29M short

Not bad

9/11
But lets check some assumption

What if unvaccinated more likely to be previously infected?

Than we need less than 60%

What if the R0 closer to 7 as some have argued? Then we need about 66% vaccinated

What if we keep some public health measures? We'll need less

So forth
But 60% of population fully vaccinated is reasonable target

Is that crazy undoable?

No

VT is at 65%.

MA, ME, and CT are above 60%. RI is at 58% -- almost there

So yeah, its doable

I know we have work to do in other states

11/12
So here we are

Delta

Most contagious variant we've seen so far

It is wreaking havoc around the world

And will cause problems here

Not horrible spikes but real problems

We arent done yet

Lets get 60% of Americans fully vaccinated

And get this Delta thing under control

Fin

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More from @ashishkjha

25 Jun
US has done well on vaccinations

Will it be enough to ward off spike from Delta variant?

Let's look to UK for to peek into our future

A month ago, UK had half the cases (per capita) as the US

Delta was starting to take hold in UK

See graph (US in blue, UK in red)

Thread
Then, over past month, Delta became dominant in UK

So what happened?

See graph

UK's infections increased nearly 6X in the past month or so

And UK cases now 5X that of the US!!

Ah you say -- that's infections. But surely no impact on hospitalizations!

3/6
Actually, hospitalization in the UK are also up

Up nearly 80% from a month ago

With no signs of slowing down

So that's not great

But surely given that UK has vaccinated all of its high risk folks, deaths are falling?

4/7
Read 7 tweets
18 Jun
Important study out of UK

Worth your time

Researchers examined brain MRIs of people before and after they got COVID, matched with controls

What did they find?

Substantial loss of grey matter in those who had gotten but recovered from COVID

Thread

medrxiv.org/content/10.110…
Loss of grey matter (thickness and volume) suggests damage to areas of the brain

Which areas?

Areas involved in smell/taste, cognitive function, and memory formation

And the kicker?

Most of COVID patients examined had had mild to moderate disease in the past

2/3
So what does this mean?

1 Appears to be good evidence that infections lead to neurologic damage in some portion of people

2 severity of neurologic effects not related to severity of initial disease

3 we have to begin to put effort into long-term effects of COVID

And....

3/4
Read 4 tweets
17 Jun
Key feature of the Delta variant is everyone needs both shots of the mRNA vaccines to be protected

But national vaccination data suggests about 10% of people have missed their 2nd shot

That's about 18 million people

And those 18M aren't spread evenly across the US

thread
So some math

As of today, there are 29M people with 1 shot

Based on daily vaccination rates, about 11M of those 29M are in window between 1st and 2nd shot

Leaving about 18M people who missed 2nd shot.
That's 10% of folks who started getting vaccinated

But....
People missing 2nd shot varies widely by state

In Hawaii, nearly 1 in 4 people who got their first shot missed their 2nd shot

Utah is at 20% of people missing their 2nd shot

IL (18%), PA (16%), and Arkansas (15%) round out worst 5

So who's good?

3/5
Read 6 tweets
29 May
Tempting to look at vaccinations in US by states

And it makes sense: states have a lot of control over vaccination sites, outreach, etc

But there's ton of variation within states

So let's talk Massachusetts, a super high vaccination state

Its a tale of two cities

Thread
Lets look at two of the larger cities in Massachusetts

Springfield and Newton

Springfield 3rd largest with a population of 150K

Newton 11th largest with a population of 91K

Difference in vaccination rates between them?

Stunning

So let's go to the numbers

2/5
Springfield:

12% of kids aged 12-15 with at least 1 shot
55% of people over 20
64% of people over 30

Newton:

64% of kids aged 12-15
93% of people over 20
99% of people over 30

That's not a typo. 99% of people over 30!!

3/6
Read 7 tweets
16 May
A lot of folks wondering since I'm fully vaccinated, why would I wear a mask at a grocery store?

Every action we take is a weighing of costs and benefits

So lets talk about fully-vaccinated me in a grocery store

Am I a risk to others? No

Am I at risk? Not much

Thread
So whats the risk to me?

Right now, infection numbers still high in MA, although falling

And if grocery store has lots of unvaxed, unmasked folks, I have a tiny risk of picking it up

Tiny

But cost of masking up is also tiny

But that's not the real reason

2/4
There are lots of folks who want to be but are not yet fully vaccinated

My wife for instance

She got her first shot right after she became eligible

She's close but not fully vaccinated. There are lots of folks like her

And by masking up, I help create a norm in society

3/4
Read 5 tweets
15 May
Thoughts on @CDCgov mask update

They got the science right: fully vaccinated folks don't need to wear masks indoors

Of course, there is one major problem: how do you know who is vaccinated?

States/companies are getting policy response to CDC guidance wrong

thread
In response to CDC, states/businesses have 3 choices:

1. Figure out who is vaccinated or not (hard to do but not undoable)

2. Drop mask requirements for everyone, hope for honor system (easy to do, not great)

3. Keep masking a bit longer (not hard to do, much better)

2/n
Option 1: figure out who is vaccinated

I get this is hard. Vax verification systems are coming but not here yet

Option 2: Drop mask mandates and hope

Not a good idea. Why? Lots of folks still not yet vaccinated. Infection levels high

Option 3: wait about 4 more weeks

3/5
Read 5 tweets

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