Nick Mark MD Profile picture
Nov 5, 2021 15 tweets 8 min read Read on X
💊Exciting news today about another oral therapy for early COVID: reduced hospitalization & mortality.

Here’s a Deep dive 🧵 on the new PF-07321332 protease inhibitor (“Paxlovid”) & the very impressive results announced from the EPIC-HR trial.
TL/DR: this is a big deal.
1/
What the heck is PF-07321332?

All coronaviruses produce a polypeptide that must be cleaved by a protease into 11 proteins. Without this protease the virus can’t co-opt cellar machinery & reproduce.

PF-07321332 Inhibits the viral main protease (Mpro).
2/

pdb101.rcsb.org/motm/242
Specifically PF-07321332 binds to the catalytic site of Mpro.

Mpro is a great target because there are unique features of Mpro not found in *any* human enzymes & because spike protein mutations wouldn’t confer resistance.

In short, an ideal drug🎯
3/

medrxiv.org/content/10.110…
In contrast to other SARS-CoV-2 drugs (remdesivir, Molnupiravir) which are nucleoside analogs, protease inhibition (PI) should have fewer off target effects. (E.g. No risk of mutagenesis).

Also analogous PI drugs are very effective against HIV & HCV. en.wikipedia.org/wiki/Protease_…
4/
Building on work with SARS-CoV1 (which has a 100% identical Mpro catalytic site) researchers developed potent covalent inhibitors of the viral Mpro: PF-07321332

(Sidebar: “electrophilic warhead” would be an excellent name for a band)
5/
pubmed.ncbi.nlm.nih.gov/33054210/?dopt…
After development of candidate Mpro inhibitors in vitro, the drug showed promise in mouse models.🐁

First in human trials (NCT04756531) began in February 2021. These studies found an effective Cmax and tolerable AE profile.🤞
5/
medrxiv.org/content/10.110…

clinicaltrials.gov/ct2/show/NCT04…
The Evaluation of Protease Inhibition in COVID-19 High Risk Patients (EPIC-HR) study was begun in July 2021.

It was a n=3000 blinded RCT comparing PF-07321332 vs placebo. It was performed at 359 sites in the 🇺🇸 & other countries (🇧🇷🇨🇴🇯🇵 🇲🇾🇰🇷 & others)
6/
clinicaltrials.gov/ct2/show/NCT04…
Sidebar: Why combine w/ ritonavir esp since lopinavir/ritonavir wasn't effective against COVID19?

They added Ritonavir not for anti-viral effects but to "boost" drug levels of PF-07321332 by inhibiting CYP3A. We do something analogous w/ "ritonavir boosted darunavir" in HIV.
7/
EPIC-HR enrolled "high risk" COVID19 patient w/i 5 days of symptoms.

High risk was defined as ≥ 1 high risk condition by CDC criteria (cdc.gov/coronavirus/20…)

Notably they are doing similar trials in standard risk pts (EPIC-SR) & post exposure prophylaxis (EPIC-PEP)
8/
The primary endpoint of EPIC-HR was hospitalization or death within 28 days of randomization.
Secondary endpoints were pretty much what you'd expect (resolution of symptoms, clearance of virus, longer term outcomes, and adverse effects).
9/
The trial record and statistical plan seem normal & rigorous.

As far as I can see no🚩 in the study design or protoocl changes. (admittedly I'm reading quickly & having worked overnight in the ICU!)
10/
The results of PF-07321332 vs placebo were impressive! So impressive that EPIC-HR was stopped early by IDMC/FDA at interim analysis.

Hospitalizations
6/607 (1%) vs 41/612 (6.7%) [p<0.0001]

28 Day mortality
0/389 (0%) vs 10/385 (1.6%) [p<0.0001]
pfizer.com/news/press-rel…
11/
Overall this was an 89% reduction in the composite outcome of death/hospitalization.
A NNT of 17 to prevent a hospitalization & a NNT of 62 to prevent a death.

& the pre-specified subgroup of patients who presented sooner (within 3 days of symptom onset) did even better.
12/
Only limited safety data provided:
Of 1881 pts, side effects "most of which were mild" were 19% w/ PF-07321332 vs 21% w/ placebo

There were fewer severe AEs w/ drug than placebo: 1.7% vs. 6.6%, & discontinuation due to side effect was more common with placebo: 2.1% vs. 4.1%
13/
Bottom line:
-the anti-viral PF-07321332 seems promising in vitro
-there were significant reductions in hospitalizations & mortality in a large phase 2/3 RCT; these are clinically meaningful effects
-I'm excited to see more data when they go to the FDA later this month!
14/14

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More from @nickmmark

Mar 9
Every year, there is a predictable spike in fatal car accidents, medical errors, & heart attacks.

It’s estimated that there are thousands of excess deaths, a 1% increase in energy consumption, & billions of dollars in lost GDP.

The cause? Daylight savings transitions.

🧵

1/ Image
Earth's axis of rotation and orbital axis are not precisely aligned. The 23.5 degree difference - 'axis tilt' - gives us our seasons and a noticeable difference in day length over the course of the year.

2/
For millennia this seasonal variation was an accepted fact of life.

In 1895, George Hudson, a New Zealand entomologist, was annoyed that less afternoon light meant less time for bug collecting.

He realized that clocks could be adjusted seasonally to align with daylight.

3/ Image
Read 27 tweets
Feb 14
Musk is so stupid. Exhibit #10544

There aren’t thousands of 150 year olds getting paid social security. There are null values in a database he doesn’t understand how to read… Image
When unidentified people get admitted to the hospital the default DOB is 1/1/1900. The EHR shows their age as 125 yo.

But *almost* everyone is smart enough to understand this is just a result of missing data… Image
Nice summary here debunking Elon’s “duplicate SSNs” claim.

thedatageneralist.com/elon-musk-does…
Read 4 tweets
Feb 8
Important point re indirects:

Unlike other Trump moves, this is arguably GOOD news for researchers!

If the NIH budget is unchanged (a big if), this allocates more money to researchers; if you go from an indirect of 75% to 15% it means you can fund 3 grants instead of 2.
Some context:

Between 1947 and 1965, indirect rates ranged from 8% to 25% of total direct costs. In 1965, Congress removed most caps. Since then indirects have steadily risen.

2/
A lot of indirects go to thing like depreciation of facilities not paying salaries of support staff.

This accounting can be a little misleading.

If donors build a new $400m building, the institution can depreciate it & “lose” $20m/year over 20 years. Indirects pay this.

3/
Read 4 tweets
Jan 22
🚨Apparently all NIH Study Sections have been suspended indefinitely.

For those who don’t know, this means there won’t be any review of grants submitted to NIH

Depending on how long this goes on for, this could lead to an interruption in billions in research funding.
With a budget of ~$47.4B, the NIH is by far the biggest supporter of biomedical research worldwide.

Grants are reviewed periodically by committees of experts outside of the NIH.

When these study sections are cancelled, it prevents grants from being reviewed & funded.
Hopefully this interruption will be brief (days)

A longer interruption in study sections (months) will inevitably cause an interruption in grant funding. This means labs shutdown, researchers furloughed/fired, & clinical trials suspended. This will harm progress & patients!
Read 8 tweets
Oct 13, 2024
#HurricaneHelene damaged the factory responsible for manufacturing over 60% of all IV fluids used in the US, leading to a major national shortage.

As clinicians what can we do to about the #IVFluidShortage and how can we prevent this crisis from happening again?

A thread 🧵
1/ Image
There are many things we can do as clinicians to improve ICU care & reduce IVF use.

1️⃣Don't order Maintenance IV Fluid!
Almost no patient actually needs continuous IV fluids.
Most either need resuscitation (e.g. boluses) or can take fluid other ways (PO, feeding tube, TPN).
2/
Frequently if someone is NPO overnight for a procedure, MIVF are ordered.
This is wrong for two reasons.
We are all NPO while asleep & don't need salt water infusions!
We should be letting people drink clears up to TWO HOURS before surgery, per ASA.

3/ pubs.asahq.org/anesthesiology…Image
Read 16 tweets
Oct 1, 2024
New favorite physiology paper: Central Venous Pressure in Space.

So much space & cardio physiology to unpack here including:
- effects of posture, 3g shuttle launch, & microgravity on CVP
- change in the relationship between filling pressure (CVP) & LV size
- Guyton curves!
1/

Image
Image
Image
To measure CVP in space they needed two things:
📼 an instrument/recorder that could accurately measure pressure despite g-force, vibration, & changes in pressure. They built & tested one!
🧑‍🚀👩‍🚀👨‍🚀 an astronaut willing to fly into space with a central line! 3 volunteered!
2/
Image
Image
The night before launch they placed a 4Fr central line in the median cubital vein & advanced under fluoro.

🚀The astronauts wore the data recorder under their flight suit during launch.

🌍The collected data from launch up to 48 hrs in orbit.
3/
Image
Image
Read 16 tweets

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