Likely covid lab leak, Taiwan BSL3.
🇹🇼 is zero covid; straightforward to track lab origin of SARS2 infections.

Lab worker in their 20s, fully vax'ed (Moderna), symptoms for a week before testing, ~50 people in quarantine h/t @chasewnelson @spectralcodex
cna.com.tw/news/firstnews…
@chasewnelson @spectralcodex English report @keverington
taiwannews.com.tw/en/news/4371080

Taiwan 🇹🇼 Central Epidemic Command Center doing an incredible job.

Case diagnosed, contacts traced and origin tracked in the same day by local experts.

Transparent reporting. Showing us how it's done.
cdc.gov.tw/Bulletin/Detai… Image
@chasewnelson @spectralcodex @keverington News update on the SARS-CoV-2 lab leak of a Delta variant from a Taiwan BSL3/P3 lab:

"A female researcher was bitten by a lab mouse while running experiments on COVID before testing positive for the virus"
taiwannews.com.tw/en/news/4371212
@chasewnelson @spectralcodex @keverington I agree with the Taiwan CECC advisor "whether the infection was caused by this, we do not yet have a way to determine that, and further investigation is needed."

Careful investigation needed to find out how the lab-acquired infection occurred in order to prevent future leaks.
@chasewnelson @spectralcodex @keverington I know there are a few virologists who are incredibly skeptical of whether coronaviruses can transmit via bites or scratches, i.e., spread by blood.

For me and many safety committees, the point of recording these incidents is noting when the situation has gotten out of control.
@chasewnelson @spectralcodex @keverington Some lab animals are incredibly nimble. If you drop them after getting bitten, you'll spend hours chasing them around the room.
There are some old research buildings infested with escaped lab mice.
More updates on the SARS2 escape from a BSL3 lab.
"genomic sequence of the Delta variant contracted by an assistant researcher, case No. 16,816, matched that of the samples she had been experimenting on at the Academia Sinica's Genomics Research Center"
taiwannews.com.tw/en/news/4372853
This story might initially feel embarrassing for Taiwan but I think they should be proud of how openly and honestly they have investigated and reported this lab escape.

They are narrowing down exactly how SARS2 escaped from a BSL3 so they can effectively address these problems.
If you don't know how a killer virus emerged in your country, how could you possibly take proper measures to prevent future outbreaks?

Finding the #OriginOfCovid is important to develop effectively measures against the types of scenarios that gave rise to this pandemic pathogen.
Countries with many labs studying SARS-CoV-2 are deluding themselves if they believe the virus has not escaped from their labs since the pandemic began.

It's just that most countries are overrun with Covid so it's hard to tell if a scientist was infected in the lab or outside.
Even in a BSL3: "some tables, doorknobs, and other surfaces had tested positive for COVID, while all tests on facilities outside the lab were negative. He said it was possible the scientist had contracted the virus from the lab environment rather than the mouse bite."
I heard a rumor that a US institute found its scientists running covid patient samples through flow cytometers at BSL2. Whether there was an investigation and what the outcomes were, I don't know.

That's why I think how Taiwan is handling its SARS2 lab escape is outstanding.
When SARS-CoV-2 infected a scientist in a Beijing lab, we only found out more than a year later through US emails obtained via the Freedom of Information Act.

This is not how lab-acquired infections should be reported.
usrtk.org/biohazards/sen…
I'll say this though. If a SARS1 x SARS2 chimera causes an outbreak, we will know it came from a lab.

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More from @Ayjchan

11 Dec
Can't believe this still needs to be said.

The reason why the lab #OriginOfCovid hypothesis "won't die" is because there is an incredible amount of circumstantial evidence pointing to it.

Both natural and lab origin hypotheses deserve a full and credible investigation.
Scientists & journalists, join me in calling for transparency.

Ask @EcoHealthNYC to release all data, records, documents & communications relating to the transfer of 1000s of pathogen samples from SE Asian countries, including Laos, to Wuhan.
Ask them to show us the exchanges leading up to their early 2018 DEFUSE proposal where they laid out a road map for inserting novel cleavage sites into novel SARS-like viruses.

Read 6 tweets
6 Dec
Thorough analysis by ⁦⁦@AshleyRindsberg⁩ ⁦@tabletmag

“the false narrative around the pandemic’s origins represented a tipping point—a comprehensive failure in journalistic quality and mores in a time of national emergency” tabletmag.com/sections/news/…
Many good lines in this article:

“For Daszak, The Lancet letter was only the opening salvo in a yearlong media campaign in which the EcoHealth Alliance head would become an Ahmed Chalabi-like presence, leading the media with claims of evidence of zoonotic spillover.”
“these formed what we might call Daszak’s triangle, a mental model that made lab leak a social and political impossibility for anyone who did not want to be branded as an anti-science, right-wing xenophobe.”
Read 9 tweets
5 Dec
2 straightforward reasons why I don't think a lab origin of Omicron is on the table.

1. Afaik there's no lab in Africa doing serial passaging of SARS2.

2. There're thousands of people (and potentially animals) infected in the region so it is unsurprising new variants emerge.
These are the same reasons that make a good case for a lab #OriginOfCovid

1. There are scientists in Wuhan conducting exactly the type of research that could've led to the emergence of SARS2.

2. There wasn't evidence of SARS-like viruses circulating in Wuhan prior to Covid-19.
If we don't want to keep being surprised by new variants with lots of new mutations in them, we should step up global sequencing efforts and think of ways to help countries get the pandemic resources they need.
Read 7 tweets
4 Dec
Things you should never hear nuclear reactor or atomic scientists cite as reasons for wanting to build their facility inside of densely populated cities.

1. How will we recruit top talent? We want to live in the best cities.

2. Accidents rarely happen. We are very skilled.
Yet somehow these reasons justify building labs concentrating and manipulating unpredictable, potential pandemic pathogens in the middle of urban centers with international airports.
Setting aside the point that virus hunting and making chimeric versions of novel viruses played (near) zero role in predicting or preventing the current pandemic, if this type of research is so critical, we must treat it with the reverence it deserves.

Read 5 tweets
4 Dec
"Deep in the underbelly of the Royal Ontario Museum in Toronto, freezers.. store bat tissue from around the world, dating back to the late 1980s."

Toronto, please create a local wildlife trade so that there is some ambiguity in case a lab leak occurs.
cbc.ca/newsinteractiv…
You won't need much. Something on the order of 10 civet cats a month will ensure that an adequate number of top virologists will express near certainty that any novel virus must have come from the local food market instead of your lab with thousands of diverse pathogen samples.
"amassed roughly 15,000 bat specimens from 400 different species...

the technique also preserves whatever viruses are hiding in the mammals...

And bats carry a lot of viruses...

... the viruses they carry can sometimes ravage humans."

Enough said.
Read 9 tweets
4 Dec
Our peer-reviewed @MolBioEvol Perspective on the SARS-CoV-2 furin cleavage site is now available to read online.

We review the FCS in the context of pathogenesis, origin & how virus sampling may alter the interpretation of existing data.
@shingheizhan

academic.oup.com/mbe/advance-ar…
@MolBioEvol @shingheizhan Against a backdrop of scientists introducing FCSs into the spikes of various CoVs including SARSr-CoVs, the discovery of a unique FCS at the spike S1/S2 boundary in SARS-CoV-2 continues to fuel heated debates about the #OriginOfCovid
@MolBioEvol @shingheizhan Without its FCS, it is unlikely that SARS-CoV-2 would have resulted in a pandemic.

Even in early 2020, it was a straightforward deduction for independent groups of scientists that an S1/S2 FCS could confer functional advantages to a SARSr-CoV.
Read 13 tweets

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