Gro-Tsen Profile picture
13 Dec, 15 tweets, 3 min read
I'm seeing a lot of discussions on the question on whether it's worse to have a pathogen that's x% more lethal or one that's x% more transmissible (with respect to some baseline). The only valid answer here is: IT DEPENDS ON MANY THINGS. 🧵⤵️ •1/15
One argument that definitely DOES NOT hold is “x% more transmissible will overgrow x% more lethal because the former is a factor inside the exponential while the latter is outside and the exponential will dominate it” which I see a lot. •2/15
Yes, it IS true mathematically that C₁·exp(c₁·t) will overgrow C₂·exp(c₂·t) (for t→+∞) when c₁>c₂ no matter what C₁,C₂>0 are, but… in a finite population, exponential growth has to stop at some point! •3/15
And yes, I've seen this kind of argument a number of times. For example: 🔽 (scroll up to see more context). •4/15
It's amazing how often people talk about exponential growth and conveniently “forget” to say anything about the end of that exponential growth. So remember: “exponential growth” alone says NOTHING about the final number of infected (attack rate). •5/15
The problem is that nobody knows how to predict how and when exponential growth stops. We have trivial epidemiological models like SIR, but they are very far from reality (e.g., they predict a single wave which, as you may have noticed 😐, didn't quite work out). •6/15
But still, we might ask the SIR model, if only as a starting point, what it thinks about “x% more transmissible” vs “x% more lethal”, and its answer is very much “IT DEPENDS”. See thread below 🔽 for some example graphs: •7/15
This isn't really surprising when you think of it: if you have a pathogen with R₀ equal to 1 000 000, well, EVERYONE is going to be infected. If it's twice or 1000× that — the same. So ONLY the lethality rate matters. •8/15
It's unclear whether we're in this territory with covid, but the fact with plain SIR is that the final attack rate of unmitigated epidemic is very soon close to 100%, so R₀ changes the rate at which it happens, not so much the attack rate in question. •9/15
As an aside, it's funny how many people have tried to scare us with super-duper-high (and honestly meaningless) R₀ values for α and δ variants which put us well in the “well, essentially everyone will be infected anyway” territory, now needing to backtrack! •10/15
Because if everyone will be infected with δ and everyone will be infected with ο, well, clearly, lethality is the thing we care most about. So by exaggerating the importance of infectiousness, these people have shot their own arguments in the foot. •11/15
Now one might say, well, the dynamics matter immensely: even if everyone will get infected, the speed at which they do matters, because it affects whether the health system will get overrun. Indeed! This is crucial: lethality is not fixed at all. •12/15
But even taking this into account the case isn't clear-cut: on the one hand you have x% more people needing to go to the hospital (wrt baseline), on the other hand you have the same number but at a rate x% higher. So the peak rates should still be comparable. •13/15
And of course, in real life, all of this is made tremendously more complicated by the presence of vaccines with only partial effectiveness. I would like to remind that there are some hidden variables here: see 🔽⏬ •14/15
So, no, there's no simple answer. Or rather, the only valid answer is “we don't know: it depends on many factors”. And even if we did know, what would be the point? it's not like we're offered a choice between Scylla and Charybdis anyway! we don't get to pick our virus. •15/15

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More from @gro_tsen

13 Dec
If for some reason you wanted to see a Loxodes magnus single-celled eukaryote die in real time while listening to a semi-philosophical discussion on the nature of life spoken by a smarmy voice, this video should suit your needs:
“Life is a chemical system that uses energy to keep itself from reaching chemical equilibrium.” → discuss!
Also: compare to Jacques Monod's proposed definition of life in his 1970 book ‘Le Hasard et la Nécessité’ (‘Chance and Necessity’), as the conjunction of: teleonomy, autonomous morphogenesis and reproductive invariance.
Read 4 tweets
13 Dec
Est-ce que quelqu'un a des lectures à recommander sur l'histoire des institutions locales en France? Je connais un peu l'histoire des constitutions et institutions nationales, mais essentiellement rien sur l'histoire des communes, départements, etc.
Par exemple, je ne savais même pas à partir de quand les conseils municipaux et généraux ont été élus. Apparemment ça a été mis en place en 1848 puis, de façon durable à partir de 1871 pour les conseils généraux et 1884 (ébauché en 1871) pour les maires et conseils municipaux.
Cf. ces trois pages sur le site web du sénat: senat.fr/evenement/arch…‌, senat.fr/evenement/arch… et senat.fr/evenement/arch… (il devrait sans doute y avoir une table des matières qui pointe vers elles mais je ne la trouve pas).
Read 6 tweets
18 Nov
Ce que je trouve fascinant avec les grincheux s'indignant que le “Robert” ait ajouté un nouveau pronom dans son dico, c'est surtout cette image prescriptiviste du dictionnaire qui dirait comment «bien» écrire plutôt que permettre de comprendre ce que les gens écrivent vraiment.
Moi je n'utilise pas le pronom «iel». (Pour la façon dont je conçois l'écriture inclusive, cf.: madore.org/~david/weblog/…‌.) Mais c'est JUSTEMENT pour ça que je suis plutôt content qu'il entre dans le dico: si j'avais un doute sur ce que veulent dire les personnes qui l'utilisent.
Je ne me sens pas menacé dans ma non-utilisation du pronom «iel» par son entrée dans le “Robert” parce que je n'utilise pas les dictionnaires pour savoir comment bien écrire, je les utilise pour savoir ce que veulent dire les gens quand ils écrivent.
Read 5 tweets
18 Nov
Bon, ce genre de petits «tours de magie» 🔽 a le don de m'insupporter. Moi je n'ai pas envie qu'on me donne un poisson, j'ai envie qu'on m'explique comment pêcher! Donc, comment générer ce genre de phrase? ⤵️ •1/15
Bon, je ne peux pas expliquer comment Gilles Esposito-Farèse a trouvé la phrase citée ci-dessus, mais je peux vous dire comment j'ai trouvé les deux ci-dessous (en même temps que reconnaître que ce n'est pas malin du tout): •2/15 Cette phrase comporte huit a, six c, sept d, vingt-cinq e, dCette jolie phrase contient huit a, huit c, cinq d, vingt-se
Mon code (Perl) est là; si on le lance, il va tourner pendant assez longtemps et finalement produire une phrase autodescriptive du genre de celles ci-dessus (et si ça se trouve identique à l'une d'elles): •3/15 gist.github.com/Gro-Tsen/32de1…
Read 15 tweets
13 Nov
I bookmarked a couple of months ago, and finally got around to reading, this article by ‘Quanta’ magazine on the story behind Freedman's proof of the 4-dimensional Poincaré conjecture — and how it was saved from being “lost”. It's quite interesting. quantamagazine.org/new-math-book-…
The statement is that any topological 4-manifold that is a homotopy sphere is, in fact, homeomorphic to a sphere. (The analogous theorem for dimension ≥5 was proved in the 1960's by Smale & others. In dimension 3 it was proved in the 2000's by Perelman.) en.wikipedia.org/wiki/Generaliz…
The gist of the story in dimension 4 is that Michael Freedman wrote a sketch of a proof in the 1980's and convinced the experts that his proof held water, but details were never fully written down beyond this basic sketch (which further contained errors).
Read 6 tweets
12 Nov
Tiens, aujourd'hui je cherchais à savoir quelle est la forme légale de Paris-Saclay, l'article fr.wikipedia.org/wiki/Intercomm… m'apprend qu'il y a des «métropoles», des «communautés urbaines», des «communautés d'agglomération», des «communautés de communes», des «syndicats …
… d'agglomération nouvelle», des «syndicats de communes», des «syndicats mixtes fermés» et «…ouverts», des «pôles métropolitain», des «pôles d'équilibre territorial et rural» et des «pays». Ça ressemble à une blague mais ça n'en est pas.
On a réussi à inventer aussi incompréhensible que le Royaume-Uni avec ses shires / historical counties, ceremonial counties, metropolitan counties, non-metropolitan counties, unitary authorities, etc. #ClubContexte
Read 4 tweets

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