I want to add one more thing here. @BrunaLab is right in the narrow sense that APCs are problematic, but they are not the problem. The problem is publisher greed, and fecklessness from scientific leaders and senior scientists who are complicit in a deeply broken system.
It is important to remember that APCs arose in response to one of the most fundamental inequalities in science - the erection by greedy journal publishers of paywalls that limit access to the scientific literature to people at wealthy academic institutions in wealthy countries.
In the early days of the #openaccess movement, we tried to convince @NIH and other funders to directly subsidize publishing, pointing out that they were already funding publishing, they were just doing it in an inefficient way that wasn't good for science.
And @NIHDirector at the time Harold Varmus agreed, proposing a system he called eBioMed that would have created a publishing system that was free to read and publish. Sadly, this was killed by publishers (primarily scientific societies) lobbying Congress.
We started @PLOS as a response to existing publishers' united defense of paywalls, and, with publishers also using their influence to block efforts to fund alternatives, we resorted to APCs to cover our costs and allow us to make paper freely available to all.
We did this in part because there were already existing mechanisms to make such payments. People forget this, but back in the day many journals, in addition to charging for access, also charged authors "page charges" that were often many thousands of dollars.
Because publishers were already raking in large amounts of cash this way, we hypothesized that they wouldn't block APCs as a way to support open access publishing. And we were right. This was critical for the success of the early #openaccess movement.
When we launched our first journal, we appealed to funders to think of this new model as a way that THEy and not authors would fund publishing journals.plos.org/plosbiology/ar…. And we continued to press them to cover these costs directly so that there were no transaction costs involved.
We also realized from the start that an APC based system would create barriers to access to authors who didn't have robust research funding. And thus at its launch @PLOS has a no questions asked waiver policy completely decoupled from editorial assessments.
One of the worst decisions in @PLOS's history was abandoning this no questions asked waiver policy - it was driven entirely by finances and done over my at Pat's objections (there's a history to write another day about the PLOS Board losing site of its missions).
We had always imagined the APCs were a transitional step on the path from subscriptions to direct subsidies, the logic of which seemed and still seems unassailable to us. But, unfortunately in a way, @PLOS built a successful business on APCs before funders saw the light.
As a result, other publishers, especially the big commercial ones, began to see them not strictly as a threat to profits but as another way to make profits.
And, as a result, the long-term cozy relationship between funders and journals that was built on subscriptions is now being reformed around APCs.
But despite now being able to see end of paywalls, we cannot claim victory if we allow in the new system we have replaced barriers to reading with barriers to publishing - as @BrunaLab demonstrates we are.
The frustrating thing is that we were - and maybe still are - so close to getting it right. It is a huge step forward that funders across the world are finally acknowledging that they have a responsibility to shape how science is communicated - and the power to do so.
But they are still largely unwilling to do what is really necessary - to demand of publishers that, in exchange for the billions of dollars they funnel their way every year - that they actually act in the best interests of science.
And thus it should be an irreducible principle of all agreements between funders and publishers that NOBODY ANYWHERE SHOULD EVER HAVE TO PAY TO READ THE SCIENTIFIC LITERATURE OR TO CONTRIBUTE THEIR WORK TO IT. This is the only #TrueOpenAccess.
So, while acknowledging the problems with APCs, let's not lose sight of the real enemy: the unwillingness of the people with money and influence in global science to use their power to create a system of science communication that truly serves us all.

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More from @mbeisen

Feb 18
Did a quick read of @BrunaLab's study of APCs and the geographic diversity of authors. It's really good, and is another important reason why we need to move beyond APCs to a publishing system that is free for everyone to read AND publish direct.mit.edu/qss/article/2/…
Publishing biases are incredibly difficult to address, and there are always a bazillion caveats, which they acknowledge, but they did as good a job as one can do with this kind of question.
Their data are pretty convincing that authors from low income countries are significantly less likely to choose to pay APCs when non-APC options are available. This is not the first observation of this effect, and I think we should stipulate it.
Read 15 tweets
Jan 21
I recently read @AliceDreger's "Galileo's Middle Finger" which is an account of her efforts to change how intersex newborns are treated by the medical profession, but also series of profiles of academic outcasts and how their work and ideas landed them in hot water.
It's not a perfect book, but I am extremely glad it was recommended to me. I learned a ton and I emerged with a really deep respect for Dreger, and a feeling that academia would be far better if there were more people with her courage.
Interestingly, one of the people she writes about is EO Wilson, focusing on accusations that peaked in the late 1970s that he, and more broadly the sociobiology field he helped to launch, were racist.
Read 29 tweets
Nov 30, 2021
What I learned from years on graduate admissions committees is that they don’t predict success - they determine it. Everyone has a pet theory, rarely based on evidence, and never based on good evidence, about what makes a successful student.
And, because the admitted pool is enriched for students who meet whatever criteria happen to be in the ascendancy, and because some of these students succeed, we convince ourselves that we were right and keep doing it.
I’m not saying that everyone is equally likely to succeed in graduate school in its current form and that there are not predictors of success. I am saying we don’t - and given our methods can’t - know with confidence what they are.
Read 9 tweets
Nov 30, 2021
it's a cartoon explaining a classic result in microbial evolutionary biology that (largely) resolved the question of whether selection acts on preexisting variation or if the selection induces mutations to occur (it won Salvador Luria and Max Delbruck a Nobel Prize)
the idea is as follows - you take a population of cells and divide them equally into a bunch of tubes and let them grow for several generations - then you pour the cells onto plates, apply some selective pressure to the cells, and count the number of colonies that grow
in the original experiment the selective pressure was exposure to a lethal virus, but it can and has been repeated with almost any condition where the growth of the bacteria requires a mutation not found in the original cell
Read 10 tweets
Nov 3, 2021
Lots of discussion here, but I really don't think it's that complicated: it reifies racism and abets racists to routinely assign population labels, especially socially constructed ones, to groups of individuals based on genetic data or for use in genetic studies.
That is not to say that the use of such labels is never scientifically justified, as @arbelharpak points out. But there should be a very high bar for their use, and it should be for very specific, clearly articulated purposes.
It is simply untenable to claim - correctly - that race is not a scientific concept, and then turn around and casually use race as if it IS a real scientific entity in papers. And substituting geographic labels for socially constructed race doesn't solve the problem.
Read 10 tweets
Aug 22, 2021
I hope we get some more clarity from Whitehead about what led to Sabatini's dismissal. Was there overwhelming evidence that the institution couldn't ignore? Or does this represent a shift in the way institutions are handling harassment allegations against prominent faculty?
Obviously, full transparency is impossible to protect people who spoke up. But that has often bogusly used by institutions as an excuse to provide zero transparency when they take no action, and I hope that doesn't happen in this case.
It is as important to demand transparency when institutions do act against their prominent faculty as it is when they don't. Because as much as I have faith in Ruth Lehmann as a person, I have zero faith in the institution she leads (or any academic institution for that matter).
Read 5 tweets

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