Jeff Gilchrist Profile picture
Dec 10, 2022 27 tweets 9 min read Read on X
Toilets, wastewater COVID-19, RSV, and Influenza all increasing

This thread will be wastewater related, looking at new variants, levels, and what happens in the air after you flush that wastewater down the toilet with some cool video/graphics. 🧵1/ Image of aerosol plumes over a flushed toilet.
The wastewater levels in Ottawa, Canada are increasing for all measures ( ). RSV and Influenza A levels continue to increase which means even more pressure will be put on the hospitals that are already overwhelmed. 2/ covid.gilchrist.ca/Ottawa.html
Graphs showing increasing RSV and Influenza A wastewater levels in Ottawa, Canada
To make matters worse, COVID-19 levels have started increasing again. You can see in the graph that levels never actually returned to low levels but are on the rise again ( ). 3/ covid.gilchrist.ca/Ottawa.html
Graphs showing increasing COVID-19 wastewater levels in Ottawa, Canada
What might be making the difference now? New Omicron BQ based variants have rapidly been increasing in Ontario and as of 10 days ago already made up more than 40% of sequenced cases ( ). Graphs by @Mike_Honey_ 4/ app.powerbi.com/view?r=eyJrIjo…
Graph showing increasing levels of BQ.* variants in Ontario
The BQ.1 Typhon and BQ.1.1 Cerberus variants specifically have overtaken all the other circulating variants in Ontario and are much more immune evasive than previous variants. 5/ Graph showing increasing levels of BQ.1 and BQ.1.1 variants now dominant in Ontario
If wastewater levels are going up again it could be because more people are susceptible to this newer variant and is being more easily transmitted amongst people, even those that have been previously infected. 6/
Speaking of wastewater, a very cool study used lasers to actually see and measure the aerosol plumes that come out of toilets when you flush ( ). H/T: @yaneerbaryam 7/ nature.com/articles/s4159…
Image of aerosol plumes over a flushed toilet.
Aerosols can transmit infectious diseases including COVID-19, influenza and likely most respiratory viruses and even Strep bacteria has airborne spread ( ). H/T: @ELHopkins 8/thelancet.com/journals/lanmi…
When you flush a toilet, it releases plumes of tiny water aerosols into the air around you which can spread pathogens from human waste and expose people in public washrooms to contagious disease ( ). 9/ theconversation.com/toilets-spew-i…
Image of aerosol plume over a flushed toilet.
A typical commercial toilet generates a strong upward jet of air with velocities exceeding 2m/sec rapidly carrying particles up to 1.5m (5 feet) above the bowl within 8 seconds of the start of the flush which you can see in this video ( ). 10/
Toilet bowl water contaminated by feces can have pathogen concentrations that persist after dozens of flushes but it is still an open question as to how much of a transmission risk toilet aerosol plumes present. 11/
Particle size matters, the smaller aerosols can stay floating in the air for sometimes hours. Particles smaller than 5 microns can be breathed directly into your lower respiratory tract and those 6-12 microns can deposit in the upper airways ( ). 12/thelancet.com/journals/lanre…
The study measured a massive increase in particles smaller than 2.5 microns with most particles being less than 1 micron. 13/
Over the bowl (Loc 1 and 2 in diagram) particle counts increased more than 10x pre-flush rates and decreased afterwards, while 1.5m away from the bowl the particle count increase was lower but remained constant after flushing ( ). 14/ nature.com/articles/s4159…
Charts of aerosol particle size measurements from various locations.
While the visible aerosols in the video (5-10 microns) scatter more light from the lasers, they also captured the dimmer light scattered by smaller aerosols which found they move within the same envelope as the larger ones ( ). 15/ nature.com/articles/s4159…
Image showing small aerosol particles staying within plume with larger droplets fall quickly outside of plume.
Most interesting is they show large droplets follow ballistic trajectories, remain outside the aerosol plume envelope and drop quickly. Yet another blow to droplet theory being a significant contributor to transmission <darn laws of physics>. 16/
Closing the lid before flushing helps but does not completely eliminate plumes as there are still large gaps of space between the lid and the bowl when closed and many commercial toilets do not have lids at all. 17/
The researchers suggest that UV disinfection systems and better ventilation could help mitigate exposure to aerosol plumes in the bathroom. The next time you visit a public washroom, think of all the aerosolized human waste you are breathing in if you aren't wearing a mask... 18/
A lot of people have been saying to close the toilet lid first which doesn't stop the aerosols coming out and contaminates the underside of the lid that people touch as pointed out by this comment ( ). 19/
As @rnaguru points out, each pathogen is different, and so far studies haven't found much infectious COVID-19 particles in urine or feces so while the risk is not zero it may be very low. This may not be the case for other viruses/pathogens though ( ). 20/
But you will still want to wear your mask in public bathrooms to at least protect yourself from respiratory aerosols from the other people using the bathroom who may be infected (COVID, RSV, Influenza, etc...). 21/
It is not just breathing in aerosols released from flushing toilets that people need to worry about, but bacteria that gets deposited on your hands from hot-air hand dryers ( ). 22/ cnbc.com/2022/12/19/how…
Image showing person drying their hands using a hot air dryer in a bathroom
A study before the pandemic found that test plates exposed to bathroom air for 2 minutes with hand dryers off averaged < 1 bacteria colony while plates exposed to hand dryer air for 30 seconds averaged 18-60 colonies ( ). 23/journals.asm.org/doi/10.1128/AE…
When researchers swabbed the interior hand dryer nozzle, they found surfaces had minimal bacterial levels so they added HEPA filters to the hand dryers which reduced bacterial deposition by 4x. 24/
This implies the bacteria was coming from the bathroom air so just after washing your hands you get pathogens deposited on them right after again. 25/
Health experts recommended using paper towels to dry their hands instead and remind everyone that acquiring infection from direct contact with other people is much more likely than from drying your hands. 26/
This study found during contact tracing that someone got infected after using a shared bathroom 40 minutes after the index case left. A good example of it isn't just the people currently there in a public bathroom you need to worry about ( … ). 27/icjournal.org/DOIx.php?id=10…

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More from @jeffgilchrist

Apr 13
*** Ontario Virus & Variant Update | Apr 13 ***

Hospitalizations due to COVID have gone down from 153 to 123 in the last update. Influenza hospitalizations decreased from 59 to 47 and RSV decreased from 110 to 85. 🧵1/

#Ontario #Virus #Variant #COVID #RSV #Influenza #Hospital Graph of New hospitalizations in Ontario due to COVID, Influenza or RSV.
Looking at age groups, those age 75+ had the highest rates of hospitalization due to COVID but decreased since last update. Second place is age 0-4 and their levels are currently increasing while age 65-74 has the third highest rate and also decreased since last update. 2/ Graph of New hospitalization rate in Ontario due to COVID by age group (100% Stacked).
The youngest age group 0-4 currently have a hospitalization rate due to COVID that are 17x higher than age 5-17, 17x higher than age 18-49, and 2.8x higher than adults 50-64. 3/
Read 25 tweets
Mar 22
*** Ontario COVID Hospitalization Rates by Age ***

Data is now available for hospital admissions due to COVID by age group going back to Oct 2021. This provides interesting insights into how much children have been impacted with serious infections compared to adults. 🧵1/ Graph of New hospitalization rate in Ontario due to COVID by age group (100% Stacked).
Chart of COVID hospital admissions per 100k population by age group from Oct. 2021 to Aug. 2025 in Ontario, Ottawa, and Toronto.
We have heard from many sources throughout the pandemic that COVID isn't serious in children or they are not impacted as much as adults with some people still claiming this today. 2/
What about today, with lower circulation happening more recently and not the huge waves seen in the past, is anyone even being hospitalized for COVID anymore? The most recent update (week of March 8, 2026) there were 188 people hospitalized in Ontario due to COVID. 3/
Read 20 tweets
Mar 14
*** Ontario Virus & Variant Update | Mar 14 ***

Hospitalizations due to COVID have gone down from 190 to 138 in the last update. Influenza hospitalizations remained stable around 49 and RSV decreased slightly from 194 to 184. 🧵1/

#Ontario #Virus #Variant #COVID #RSV #Influenza Graph of New hospitalizations in Ontario due to COVID, Influenza or RSV.
Looking at age groups, those age 75+ had the highest rates of hospitalization due to COVID but decreased since last update. Second place is age 65-74 and their levels are currently decreasing while age 0-4 has the third highest rate and also decreased since last update. 2/ Graph of New hospitalization rate in Ontario due to COVID by age group (100% Stacked).
The youngest age group 0-4 currently have a hospitalization rate due to COVID that are 11x higher than age 5-17, 5.5x higher than age 18-49, and 2x higher than adults 50-64. 3/
Read 16 tweets
Jan 11
*** Ontario Virus & Variant Update | Jan 11 ***

Hospitalizations due to COVID increased from 176 to 241 in the last update. Influenza hospitalizations have start dropping from the peak of 1,400 to 1,095 with RSV increasing from 121 to 156. 🧵1/ Graph of New hospitalizations in Ontario due to COVID, Influenza or RSV.
Looking back over the past few years, new hospitalizations for RSV have remained pretty stable the last two years around 2,500 and a decrease from 2023, while COVID has been significantly dropping each year, 26,571 in 2023 to 15,739 in 2024 to 6,788 in 2025. 2/ Graph of New hospitalizations in Ontario due to COVID, Influenza or RSV, grouped by calendar year.
Influenza has been doing the opposite, increasing significantly each year from 3,486, to 4,380 in 2024, to 12,818 in 2025. 3/
Read 13 tweets
Oct 25, 2025
How does various mask fit compare to filter the air and protect you or others?

Most masks, even baggy blue procedure masks use filtering material that can filter 95%+ of particles that pass through it, but the key is "pass through it". 🧵1/ Bar chart titled “Equivalent Exposure Time to Unmasked Person.” The chart compares how long different masks/respirators extend the equivalent exposure time relative to being unmasked. The x-axis shows unmasked infection times of 1, 5, and 10 minutes. The y-axis shows equivalent masked exposure time, ranging up to 5000 minutes. Seven mask types are represented by colored bars: - Procedure mask (loose fit, FF=2) - Ear loop mask (tight fit, FF=6) - Vertical bifold headband mask (FF=30) - N95 headband masks with fit factors of 100, 200, and 500 Key pattern: higher fit factor masks dramatically ...
Protection mostly depends on how well that mask fits your specific face and one that does not fit well, much of the air you breathe will go around the filter material and filter 0% of those particles. 2/
There has been a chart going around recently that talks about "Time it takes to transmit an infectious dose of COVID-19" which is misleading if you don't understand all of the details of how that table was made and what each component means. 3/
Read 25 tweets
Oct 19, 2025
** Ontario Variant Update (to Oct. 3, 2025) **

The XFG.* "Stratus" family is accounting for 83% while the next closest variant family NB.1.8.1.* "Nimbus" is 12.8% of sequenced genomes from COVID tests. 🧵1/ Line graph showing COVID-19 variant family frequencies in Ontario, Canada, from June to October 2025, based on 3,722 sequenced genomes.
Looking at specific variants, XFG.3 has dropped considerably and its descendent XFG.3.15 now takes first place at 6.2%, followed by XFG.3 at 5.2% and XFG.2 at 4.5%. 2/ Line graph showing specific COVID-19 variant frequencies in Ontario, Canada, from June to October 2025, based on 3,722 sequenced genomes.
It looks like PY.1.1.1 was trying to make a run for the top in mid-September but has decreased significantly. PY.1.1.1 is a descendant of LF.7 while the XFG variant is a recombination of LF.7 and LP.8.1.2 so they would share some mutations in common. 3/
Read 10 tweets

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