Ilya Shabanov Profile picture
Jun 17 16 tweets 25 min read Twitter logo Read on Twitter
Here is my newest workflow for an Effortless Literature Review.

It uses @perplexity_ai, @scite, @LitmapsApp, @obsdmd and @teampaperpal.

Tutorial with detailed examples & all the tools:
(Updated with new AI tools)
👇 Image
@perplexity_ai @scite @LitmapsApp @obsdmd @teampaperpal The first step is to find a "gateway" paper.

We will use it to get an overview of our topic.

Ideally it has many REFERENCES for us to dig deeper.
And it has many CITATIONS (which we can identify with @LitmapsApp)

The best type is therefore a popular REVIEW paper! Image
@perplexity_ai @scite @LitmapsApp @obsdmd @teampaperpal 1. @perplexity_ai is a perfect academic search engine

Ask questions in plain english to start learning about your topic.

The [ ] button shows the sources in a popup.

Here is a paper titled: "...A review of two decades of research...".

That's what we were looking for! Image
@perplexity_ai @scite @LitmapsApp @obsdmd @teampaperpal Collecting all papers before reading them quickly overwhelms me.

Instead I start reading the first review but SLOWLY and CAREFULLY.

This is called a VERTICAL strategy.

To build knowledge think in concepts, not papers. For every CONCEPT you find, make a note and link. Image
@perplexity_ai @scite @LitmapsApp @obsdmd @teampaperpal Notes for me are synonymous with @obsdmd

It's free, private, fast, versatlie (plugins) and almost bug-free.

If you have never worked with @obsdmd, here is a one image introduction.

You can sign up for my free 8-day course on Obsidian (link in bio) notes. Image
@perplexity_ai @scite @LitmapsApp @obsdmd @teampaperpal Review papers will often present CONFLICTING OPINIONS on a topic.

e.g. The highlight in this paper talks about 3 camps.

Collect these papers into a READING LIST.

But don't just collect, write down WHY you want to read it.

This will help you to decide what to read next. Image
@perplexity_ai @scite @LitmapsApp @obsdmd @teampaperpal There is a neat trick to find a reference from a paper quickly using @LitmapsApp

You don't even need an account.

@perplexity_ai @scite @LitmapsApp @obsdmd @teampaperpal This method will give you REFERENCES (i.e. everything before this paper), but you are also interested in CITATIONS (i.e. everything after this paper)

This is what @LitmapsApp is for.

Let's create a collection of the 4 papers we have so far and find related ones.
🎥
@perplexity_ai @scite @LitmapsApp @obsdmd @teampaperpal You can do the above with a free @LitmapsApp account.

If you are only looking for CITATIONS (future), you will need a premium account.
(Video shows how to use it)

IMPORTANT: Be selective when adding papers to your reading list.
My rule of thumb: Keep it under 10 papers.
@perplexity_ai @scite @LitmapsApp @obsdmd @teampaperpal Litmaps can visualize your collection in a game changing visual way.

Location in graph tells you how recent a paper is and how many citations it has.

That means: Impactuful papers are at the top right (many citations & recent).

(Big circles signify reviews). Image
@perplexity_ai @scite @LitmapsApp @obsdmd @teampaperpal Instead of BROADENING you can also go DEEPER.

This is what @scite is for.

Search for a paper that presents an argument.

Set the citation types filter to "contrasting".

These are papers that DON'T support the argument.

Now you can learn about BOTH SIDES of an argument. Image
@perplexity_ai @scite @LitmapsApp @obsdmd @teampaperpal 6. Write short outlines every 5-10 papers.

While it feels counter-productive, it is crucial to write short outlines.

- You develop an argument
- You link papers and concepts together in your notes.
- You create drafts for your publication

I find 30 mins every few days enough. Image
@perplexity_ai @scite @LitmapsApp @obsdmd @teampaperpal 7. Ideas & Questions

A problem for novel scientists is identifying relevant RESEARCH QUESTIONs.

Group your thoughts on a topic, relevant papers and concepts in a question note!
(Papers often explicitely point them out.)

Expand more developed questions into separate notes. Image
@perplexity_ai @scite @LitmapsApp @obsdmd @teampaperpal 8. Writing your manuscript

Collect all your Outlines, papers and questions to have the raw materials to write a first draft.

I make a few grammatical mistakes and need more experience in academic writing - to help with that @teampaperpal is a great:

@perplexity_ai @scite @LitmapsApp @obsdmd @teampaperpal Summary

1. @perplexity_ai finds reviews from plain text questions.
2. Make detailed notes on CONCEPTS, not papers.
3. Note WHY you want to read something, in your @obsdmd list.
4/5. Use @scite to go deeper, @LitmapsApp to go broader.
6. Make free text outlines every 5-10 papers. Image
@perplexity_ai @scite @LitmapsApp @obsdmd @teampaperpal If there is enough interest in the community, I will organize another webinar!

Please leave your email, to receive an exclusive discount, when the date is set.

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More from @Artifexx

Jun 19
Summarizing papers and making highlights will fail you in the long run.

To complete a literature review for 100+ papers you will need a system.

This is my note-taking and annotation WORKFLOW:
(Best part: linking directly to annotations inside a PDF)
👇 Image
If you haven't tried it yet, download @obsdmd to take your notes.

If I am not in the lab or field, this is where research happens.

It has a powerful plugin for annotating PDFs as well.

(More info under the link in my profile) Image
@obsdmd 1. Source notes for each paper

In science everything needs a reference or else it might be plagiarism!

Create one note for every paper you deal with (even if you haven't read it yet).

Whenever you make a note of something, add a link to this source note. Image
Read 12 tweets
Jun 18
What would you like to see in my next webinar on Literature Review?

Explanations in the thread (read before voting!):
👇
1. Discovering RELEVANT Literature can be a challenge if you just use google.

One of the best ways to discover literature in my opinion is @LitmapsApp.

It has a stunning graph view and very advanced features for quickly finding literature Image
2. AI Tools

To quote every other tweet in my feed. "If you have not heard about AI, you are living under a rock".

AI is a game changer but most tools I tried are more impressive than really useful.

@scite however is a tool that "sticks":
Read 7 tweets
Jun 15
If you aren't using backlinks in your notes, you miss out on 50% of ideas.

Every missed connection is possibly a missed idea.

Here is how to leverage backlinks for ideas:
(even without linking!)
👇 Image
A LINK is something you add manually: A links to B.
A BACKLINK is created automatically: B now has a backlink to A.

Here is an example note.

The 4 outgoing links DESCRIBE details of the note.
So a (forward) link is to dig deeper into a topic. Image
Pretty much all modern note taking tools have a possibility to display backinks too (not MS Word or google docs though).

I use @obsdmd.

Click the 3 little dots at the top
Select "Backlinks in Document".

Backlinks will be displayed at the bottom of the document. Image
Read 9 tweets
Jun 7
ChatGPT has limited academic knowledge and makes mistakes.

But DanteAI will TRAIN ChatGPT using your notes and academic papers!

I uploaded all of my notes and the results are magical.

Train your ChatGPT research assistant like this:
👇 Image
1. Create a FREE account on @DanteTheAI

The free account allows you to upload a good amount of text and ask 30 questions every month.

This will be enough to try it out. Image
2. Create a "Knowledge Base"

Dante AI trains ChatGPT using files (PDFs, text etc) you provide.

A knowledge base is a collection of files on one area of expertise.

On the free account you can create one knowledge base.

Click "New Knowledge Base" to get started. Image
Read 13 tweets
Jun 6
The greatest measure of academic success is novel ideas.

Here are 5 methods to create ideas on auto-pilot:
👇 Image
Creativity is connection

If you read a paper using a novel statistical method.
And another describing an open problem in your field.

What is your contribution?

✅ CONNECT the method with the problem.

In most cases a new idea is a combination of existing information!
1. Link your notes heavily.

Here is an example in @obsdmd - it's "mostly links" or mostly CONNECTION.

- Blue links are links to papers (or books)
- Green links are concepts
- Yellow links are annotations

From this note alone I can zoom into any related concept in no time. Image
Read 12 tweets
Jun 5
Want to use AI for academic writing, but don't trust ChatGPT?

Trinka AI will correct your entire manuscript in just a few minutes.

Here is how I edited 5975 words in under a minute:
👇 Image
1. Make an account with @thetrinkaai - it's free.

You can edit the first 5,000 words for free.

For comparison: The average research paper is about 4,500 words.
2. Click on Auto File Edit

At the top right in this screen you will find a possibility to upload a Word file.

Alternatively connect with Google Drive, One Drive or DropBox to load the file from there. Image
Read 9 tweets

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