Vipin M. Vashishtha Profile picture
Jun 20 5 tweets 2 min read Twitter logo Read on Twitter
Knowledge about how genomes change over time is key for our understanding of evolution. Though fission & fusion rearrangements represent just a small fraction of the ways in which genomes can change, we know little about how these mutations become fixed in populations 1/
Rearrangements could fix by genetic drift if they are weakly deleterious or neutral, or they may instead be favoured by positive natural selection. 2/
To address this, a team of #Spanish researchers analysed genome wide variation in butterflies to infer past demography and natural selection in relation to chromosome rearrangements. 3/
Here are the main findings:

1-drift is a stronger force than overall diversity would suggest.

2-drift is not strong enough to fix considerably underdominant rearrangements. 4/ Image
3-there is only weak evidence that chromosomes fusions fixed through positive natural selection or meiotic drive.

We need similar investigations in other organisms which together will illuminate how genomes evolve across the tree of life. 5/

biorxiv.org/content/10.110…

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More from @vipintukur

Jun 20
Why is COVID notably severe in the elderly & in those w/ underlying chronic conditions?
A new study concludes that increasing the ACE2 location near endocytic lipids increases viral infectivity & may help explain the selective severity of COVID in aged & diseased populations 1/ Image
Cholesterol in the plasma membrane is an important regulator of ACE2 localization between GM1 & PIP2 clusters and this distribution is a core contributor to SARS-CoV-2 entering the endocytic pathway.

Serum lipids increase SARS-CoV-2 pseudovirus (SARS2-PV) infection👇
2/ Image
Additional saturated lipids, such as sphingomyelins, which are minor components of apoE cargo, likely contribute to ACE2 translocation especially in the aged and those with chronic inflammation.

Age and disease increase cholesterol in mouse lung tissue👇 3/ Image
Read 7 tweets
Jun 19
Neonates exposed to maternal COVID-19 during later development have displayed neurodevelopmental and motor skill deficiencies, suggesting the potential for consequential neurological infection or inflammation in utero. 1/
SARS-CoV-2 transmission to fetal tissues occurs at later stages of gestation, including the fetal brain, in a human ACE2-KI mouse model. 2/ Image
SARS-CoV-2 targets blood vessel-comprising endothelial cells, neurons, glia, and choroid plexus cells in the fetal brain.

High levels of gliosis occur in the neonatal brain within a week after in utero infection, and macrosomia is seen in infected pups. 3/ ImageImage
Read 4 tweets
Jun 19
Duration of infectivity of primary & recurrent COVID-19 in HCWs

Most (88.4%) had received ≥3 SARS-CoV-2 vaccine doses, and 16.5% had COVID-19 previously.

Findings:

-Viral culture positivity decreased from 71.9% on day 5 of infection to 18.2% on day 10. 1/ Image
-Participants with recurrent COVID-19 had a lower likelihood of infectivity than those with primary COVID-19 at each follow-up (day 5 OR, 0.14; p<0.001]; day 7 OR, 0.04; p=0.003]) and were all non-infective by day 10 (p=0.02). 2/ Image
-Independent predictors of infectivity included prior COVID, a RT-PCR Ct value <23, but not symptom improvement or RADT result

The CDC criteria would identify 36% of all non-infectious individuals on Day 7. However, 17% of those meeting all criteria had a +ve viral culture. 3/
Read 4 tweets
Jun 18
Much debate is currently going on about which member of the XBB should be chosen for the revised covid vaccine for US citizens for the coming winter. Should it be XBB.1.15 (Kraken) or XBB.1.16 (Arcturus) or XBB.1.9 (Hyperion)? 1/

fortune.com/well/2023/06/1…
But wait, why do you want to revise the Covid shot once again? One may say the old, Wuhan-based (WT) vaccines may be ineffective due to the great antigenic distance between the WT strain and the XBBs! But wait, again. What’s your objective? Who are the target populations? 2/ ImageImage
If the objective is to prevent symptomatic infection, then probably it may not be attainable considering the extremely high pace of its evolution. And the brief nature of the protection accorded by current injectable vaccines. 3/

bmj.com/content/377/bm…
biorxiv.org/content/10.110…
Read 11 tweets
Jun 18
The pandemic had already been declared "over” in many countries & most people perceive it something that had occurred in the past. But the virus hasn’t stopped evolving. 1/
The next threat may be the emergence of new Serotypes, “at which substantial antigenic differences are observed between lineages, to the point where the immune system, after having encountered one of the two strains, recognizes another poorly or not at all.” 2/
One can think of the difference between serotypes as that between a domestic cat and a lion, and that between variants as analogous to a persian cat and siamese cat. 3/ Image
Read 5 tweets
Jun 1
Most individuals infected with SARS-CoV-2 will recover without developing pneumonia. A few infected patients, however, develop pneumonia, and occasionally develop cytokine storms. 1/
In such cases, it is assumed that there is an inadequate immune response to eliminate viral infected cells & an excessive inappropriate immune response causing organ damage. 2/
A new study concludes that the imbalance of CD4+ T-cell immunity generates excessive immunity that does not lead to viral eradication. 3/

biorxiv.org/content/10.110…
Read 8 tweets

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