The Sato Lab (Kei Sato) Profile picture
Sep 7, 2023 9 tweets 3 min read Read on X
BREAKING🔔 A new study from G2P-Japan🇯🇵 is out! The preprint will be out so soon, but first we show our results on BA.2.86 - transmissibility, infectivity and immune resistance. This would be the 4th non-peer-reviewed🗒, but includes some new stuff. Please retweet/repost🔥 1/
Cf. Non-peer-reviewed works on BA.2.86:
The 1st🗒 from @yunlong_cao :


The 2nd🗒 from @BenjMurrell :


The 3rd🗒 from @BarouchLab :


Here I summarized the mutations detected in BA.2.86. 2/


Image
1⃣Transmissibility/fitness (Re):
Analysis by Jumpei @jampei2 using the data from 🇩🇰 showed that BA.2.86's Re is greater than XBB.1.5 and comparable to or even greater than EG.5.1. 3/ Image
2⃣Infectivity (pseudovirus):
BA.2.86 is ~20-fold LESS infectious than EG.5.1. 4/ Image
3⃣Immune resistance:
All vaccine sera tested (monox3, monox4, BA.1 bivalent, and BA.5 bivalent) showed NO neutralizing activity against BA.2.86 (and EG.5.1). 5/ Image
Three monoclonal antibodies (Bebtelovimab, Sotrovimab, Tixagevimab) that were antiviral against the parental BA.2 (see the G2P-Japan 9th paper) did NOT work against BA.2.86 AT ALL. 6/

Image
Finally, the anti-BA.2.86 activity of XBB breakthrough infection sera was PRETTY POOR, and BA.2.86 was significantly (1.6-fold) more resistant to these sera than EG.5.1. 7/ Image
Altogether, it is suggested that BA.2.86 is one of the most highly immune evasive variants ever and should have the potential to be considered as a variant of interest. 8/
Btw, 2 inturnship students from 🇮🇩 and 🇬🇧, Olivia and Yoonjin, did a great job in this urgent project. A great summer labwork🌊!! 9/

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More from @SystemsVirology

Oct 17
BREAKING🔔 A new study from G2P-Japan🇯🇵, led by Yu in my lab, is out at bioRxiv @biorxivpreprint. We elucidated the virological characteristics of SARS-CoV-2 #XEC. Please repost🔥 1/
biorxiv.org/content/10.110…
Compared with KP.3, #XEC harbors two spike substitutions, S:T22N and S:F59S. Recombination analysis by Shusuke @KawakuboShusuke showed that XEC is a recombinant lineage of KS.1.1 (JN.13.1.1.1) and KP.3.3 (JN.1.11.1.3.3) with a breakpoint at genomic position 21,738–22,599. 2/ Image
Image
Transmissibility/fitness (Re):
Molecular phylogenetic-epidemic dynamics modeling led by Jumpei @jampei2 and Kaho showed that the Re of #XEC is greater than that of KP.3.1.1, the most predominant variant in the world. 3/ Image
Read 7 tweets
Jul 17
#拡散希望 速報🔔 G2P-Japan🇯🇵の新しい研究成果「新型コロナウイルス変異株KP.3.1.1のウイルス学的特性の解明」について、プレプリント公開に先立って速報します。本研究では、最近いくつかの国で増加傾向にある、JN.1の子孫株である新しい変異株KP.3.1.1の特性を検証しました。1/
春になり、JN.1の子孫株が出現し、それらが優勢になり始めています。現在本邦は第11波に入っていますが、それはこれらのJN.1の子孫株によって引き起こされています。現在の流行状況などについては、本日公開の最新コラムで解説しています↓ 2/
そのひとつ、KP.2 (JN.1.11.1.2)については、すでにG2P-Japan🇯🇵が論文として報告しています。3/
Read 10 tweets
Jul 17
BREAKING🔔 Here I want to quickly report our new results from G2P-Japan🇯🇵 before the preprint publication. We have elucidated the virological characteristics of SARS-CoV-2 KP.3.1.1 - a progeny of JN.1. Please RT🔥 1/
Cf.1 A new one, KP.2 (JN.1.11.1.2), has been already elucidated. 2/
Cf.2 Another new ones, KP.3 (JN.1.11.1.3), LB.1 (JN.1.9.2.1) and KP.2.3 (JN.1.11.1.2.3), have also been already elucidated. 3/
Read 8 tweets
Jun 6
#拡散希望 速報🔔 G2P-Japan🇯🇵の新しい研究成果「新型コロナウイルス変異株KP.3, LB.1, KP.2.3のウイルス学的特性の解明」について、プレプリント公開に先立って速報します。本研究では、最近いくつかの国で増加傾向にある、JN.1の子孫株である新しい3つの変異株の特性を検証しました。1/
春になり、JN.1の子孫株が出現し、それらが優勢になり始めています。そのひとつ、KP.2 (JN.1.11.1.2)の特性については、すでにG2P-Japan🇯🇵が論文として報告しています。2/
今回着目したのは、KP.2にやや遅れて出現した3つの株、KP.3 (JN.1.11.1.3)、LB.1 (JN.1.9.2.1)、KP.2.3 (JN.1.11.1.2.3)です。それぞれ、こんな変異を持っています。
(*参考まで、JN.1=BA.2.86.1.1で、BA.2.86系統の子孫株)3/ Image
Read 8 tweets
Jun 6
BREAKING🔔 Here I want to quickly report our new results from G2P-Japan🇯🇵 before the preprint publication. We have elucidated the virological characteristics of SARS-CoV-2 KP.3, LB.1 and KP.2.3 - progeny of JN.1. Please RT🔥 1/
Cf. A new one, KP.2 (JN.1.11.1.2), has been already elucidated. 2/
Here we focused on relatively new ones, KP.3 (JN.1.11.1.3), LB.1 (JN.1.9.2.1) and KP.2.3 (JN.1.11.1.2.3). These variants harbor these mutations⬇️ 3/ Image
Read 7 tweets
May 20
#拡散希望 第2回新型コロナウイルス研究集会を、8月2日〜4日に東京・品川で開催します! 今年のテーマは「COVID-19の疫学、臨床医学、免疫学、ウイルス学」。新型コロナに関する科学のすべてを網羅した集会になるよう準備を進めています! 1/
confit.atlas.jp/guide/event/co…
参加・演題登録はこちらから↓
今年は「オンデマンド配信」も予定しています。先約があったり、遠方で現地参加が難しい方や、医療従事者のみなさまにも広くご参加いただき、新型コロナの科学の最先端を知る機会を提供できればと思っています。2/
confit.atlas.jp/guide/event/co…
今年は、G2P-Japanが基礎ウイルス学を担当し、免疫学を⾼橋宜聖先生(感染研)、臨床医学を忽那賢志先生(阪⼤)@kutsunasatoshi 、公衆衛生学を押⾕仁(東北⼤)に担当いただきます。3/
confit.atlas.jp/guide/event/co…
Read 5 tweets

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