Jeff Gilchrist Profile picture
Sep 10, 2023 40 tweets 10 min read Read on X
#Novavax vs mRNA vaccine

This thread explains how @Novavax is different from the #Moderna and #Pfizer #mRNA #vaccines and describes some of the benefits such as broadened #variant recognition, more durable #immunity, and fewer side effects. 🧵1/ Image of COVID-19 virus, mRNA strand, Novavax vaccine spike nanoparticles and a syringe. Image made from content at : https://www.genomicseducation.hee.nhs.uk/blog/why-mrna-vaccines-arent-gene-therapies/ and https://www.novavax.com/science-technology/recombinant-protein-based-nanoparticle-vaccine-technology
An unrolled one-page web view for this long thread that may be easier to read or share can be found here ( ). 2/
Novavax is a protein based vaccine (similar designs have also been used for many years for tetanus, diphtheria and hepatitis B). Novavax presents the full COVID-19 Spike protein in nanoparticles designed to mimic the structure of the virus itself ( ). 3/ novavax.com/science-techno…
Image showing COVID-19 virus with spike protein and Novavax Spike protein trimer attached to a nanoparticle core to mimic the structure of the virus. Image from: https://novavax.com/science-technology/recombinant-protein-based-nanoparticle-vaccine-technology
mRNA vaccines on the other hand get your immune cells to produce copies of the full Spike protein as single Spikes on their own which may interact differently with the immune system than Novavax's multi-Spike arrangement around a core. 4/ Image showing COVID-19 spike protein created from mRNA inside an immune dendritic cell, on its own. Image from: https://www.youtube.com/watch?v=8nD6Q9X0SFw
This video shows you how the mRNA Spikes are produced in your body ( ). 5/
Another big difference between Novavax and the mRNA vaccines is that Novavax uses an adjuvant called Matrix-M made from the soapbark tree to enhance the immune response to the vaccine. 6/
This adjuvant induces early activation of innate immune cells at the injection site and in the draining lymph nodes ( ). H/T: @paulseaman31 7/ tandfonline.com/doi/full/10.10…
Diagram showing what happens to the vaccine and adjuvant molecules after being injected into the muscle and after being taken up by antigen presenting cells. Image from: https://www.tandfonline.com/doi/full/10.1080/21645515.2023.2189885
You can read the study to to get much more details about the mechanisms of action with Matrix-M, including interesting facts such as within 24 hours both the Spike antigens and adjuvant are undetectable at the injection site... 8/
...since they have already been processed and transported to the draining lymph nodes by immune cells. I wonder if that is one of the reasons why many people feel much less pain in their arms after injection compared to mRNA shots? 9/
Using Matrix-M translates into an improved magnitude and quality of the antibody response to the Spike protein (antigen) and importantly broadened recognition of locations on the Spike (epitopes). 10/
This improvement was actually seen in the real world with the BA.1 and BA.5 variants and the original Novavax vaccine formula. 11/
Both Pfizer and Moderna released bivalent BA.1/BA.5 vaccines in fall 2022 since the antibodies generated from their original mRNA vaccines could no longer neutralize these newer Omicron variants. 12/
Novavax however did not release a bivalent vaccine because their original vaccine formula with Matrix-M still worked with the BA.1 and BA.5 variants. 13/
The Matrix-M adjuvant elicited antibodies from a broader set of locations on the Spike protein (epitopes) so even when some of the locations mutated with BA.1 and BA.5, the conserved locations could still be recognized by the immune system. ( ). 14/ medrxiv.org/content/10.110…
Graphs showing Immunogenicity of NVX-CoV2373 against ancestral and variant strains of SARS-CoV-2, by dose (n=34). (A) Anti-rS IgG titers by dose for the ancestral (n=34) and BA.1 variant (n=31). Data were not available for the BA.1 variant for 3 of 34 participants. Dotted line represents approximate correlates of protection titers as derived for the ancestral strain.22 (B) Neutralizing (ID50) antibody titers by dose for the ancestral, BA.1, and BA.4/BA.5 variants. Dotted line represents approximate correlates of protection titers as derived for the ancestral strain.22 (C) Antigenic cartogra...
There have also been suggestions to improve mRNA vaccine potency, durability, safety and T-cell response by using adjuvants ( ). 15/nature.com/articles/s4155…
In mice they found the adjuvant in mRNA vaccines increased antibody levels 10x and produced Fc-binding antibodies which showed better control over viral replication and help predict resolution of severed COVID-19 ( ). 16/
Many people have anecdotally discovered and reported that Novavax doses had much lower side effects than when they received an mRNA shot. 17/
Multiple studies have now shown this to be the case as well. One preprint study (supported by Novavax) that compares the reactogenicity (frequency of side effects) of Novavax and mRNA vaccines ( ). H/T: @michaelzlin 18/medrxiv.org/content/10.110…
They found a notable difference in the percentage of reported side effect symptoms with Novavax being lower in each category:
* 30.8% lower muscle pain
* 30.4% lower injection site pain
* 25.7% lower fatigue
* 25.4% lower injection site tenderness
* 24.9% lower malaise

19/ Graph of Percentage of Booster Dose Participants Reporting Local and Systemic Adverse Events. Solicited local and systemic adverse events among participants receiving an mRNA booster (blue) or an NVX-CoV2373 booster (orange) which are plotted. Unadjusted results are based on participant diaries collected over 6 days post-vaccination. Image from: https://www.medrxiv.org/content/10.1101/2023.05.31.23290594v1.full
* 22.4% lower swelling
* 18.3% lower headache
* 17.5% lower joint pain
* 13% lower redness
* 12% lower fever
* 3.5% lower nausea/vomiting

20/
What about people who had mRNA doses previously but want to consider Novavax? There have been several studies now that found mixing the two, getting mRNA and then Novavax actually gave better results than just mRNA on its own. 21/
One study found that getting Novavax as a booster after mRNA "may enhance the persistence and durability of vaccine-mediated immunity compared to mRNA options"... 22/
...with slower decay rate compared to an mRNA booster dose and less side effects than mRNA boosters ( ). H/T: @Daniel_E_Park 23/tandfonline.com/doi/full/10.10…
A randomized controlled trial found that getting a Novavax dose after Pfizer mRNA elicited the highest humoral and peak cellular immune responses ( ). H/T: @michaelzlin 24/journalofinfection.com/article/S0163-…
The mRNA + Novavax combination also had the lowest rate of breakthrough infections and the study also found fewer moderate and severe systemic adverse effects for Novavax than Pfizer mRNA. 25/ Graph of Kaplan–Meier curves for risk of self-reported SARS-CoV-2 infections during follow-up. B: seronegative participants randomised before 29th November 2021; Image from: https://www.journalofinfection.com/article/S0163-4453(23)00330-4/fulltext
Neutralising antibodies against Omicron BA.1 and BA.2 were higher with Novavax after mRNA compared to two mRNA doses. 26/
Now you have more details as to how Novavax is different and some of the nice benefits including for people who had mRNA shots previously. 27/
I'm hoping that the Matrix-M adjuvant will again show its ability to broaden the immune system's ability to choose epitopes so that it might continue to work better for upcoming variants as it did when BA.1 and BA.5 emerged. 28/
FYI, I do not work for Novavax or have any investments or make any money from Novavax selling products. 29/
I am a little confused as to why @Novavax just recently filed their regulatory approval paperwork with Health Canada as many people are waiting for the fall boosters so it would be a shame if they were not available soon like the mRNA fall boosters are expected to be. 30/
While vaccines are important, they should be the last layer of protection to rely on in case all the other layers fail and you get exposed. Vaccines should not be the one and only layer governments all seem to be currently relying on. 31/ Click "Show replies" 👇 to continue.
ASHRAE Standard 241, Control of Infectious Aerosols ( ) was released in July 2023 so this should now be adopted and required in air quality standards for buildings like governments already require clean drinking water standards for these same buildings.32/ashrae.org/technical-reso…
It is important to have good indoor air quality, not just from viruses but also for cognitive function and from other air pollutants (like wildfire smoke) which have been linked to various health problems ( ). 33/
Aerosol and particulate matter (PM) particles can also be filtered and removed from the air using HVAC filters like MERV-13 or better, HEPA filters, build yourself CR-boxes with traditional fans or super quiet versions with PC fans. 34/
You can find guides and useful information on my website ( ). 35/covid.gilchrist.ca
Since you don't have control over the air quality in most public spaces you can also use personal filters (aka masks) with a good seal designed to protect from airborne pathogens like N95 respirators. 36/
To find out how well your mask seals, you can see my thread on fit testing ( ) and some of the test results I got comparing masks ( ). 37/
Some people misunderstand and think filters such as HEPA and mask material work like a sieve or chain link fence which allow smaller objects like flies to pass through. 38/
This thread explains how the laws of physics are used to allow the filtering material to stop such tiny smoke and aerosol particles ( ). 39/
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More from @jeffgilchrist

Jul 25
No Novavax JN.1 vaccine for Canada?

It seems Canada has not ordered any Novavax JN.1 vaccine doses for the fall which means this protein based vaccine option may not be available to anyone who wants or needs it. We are hoping you can help us change that. 🧵1/ English executive summary: A group of concerned stakeholders advocating for broader access to diverse COVID-19 vaccine options for Canadians, particularly those beyond the mRNA vaccines currently dominating the public offering wrote a letter to the Public Health Agency of Canada (PHAC), all the provinces/territories and immunization providers to address the pressing need for enhanced COVID-19 awareness and education, increased availability and access to protein-based vaccines, such as Novavax, which are currently limited in distribution.
A group of concerned stakeholders advocating for broader access to diverse COVID-19 vaccine options for Canadians, particularly those beyond the mRNA vaccines currently dominating the public offering wrote a letter to the Public Health Agency of Canada (PHAC)... 2/ Resume francais: Nous vous écrivons en tant que parties prenantes revendiquant un accès plus large aux différentes options de vaccins contre la COVID-19 pour les Canadiens, particulièrement au-delà des vaccins à ARNm qui dominent présentement l’offre publique. Nous exhortons l’Agence de la santé publique du Canada (ASPC), toutes les provinces et tous les territoires ainsi que tous ceux qui fournissent des vaccins à s’attaquer au besoin pressant d’une meilleure sensibilisation et éducation sur la COVID-19, ce qui inclut une plus grande disponibilité et un meilleur accès aux vaccins à base de...
...all the provinces/territories and immunization providers to address the pressing need for enhanced COVID-19 awareness and education, increased availability and access to protein-based vaccines, such as Novavax, which are currently limited in distribution. 3/
Read 10 tweets
May 22
Novavax JN.1 Vaccine Neutralization

Novavax revealed they had selected the original JN.1 variant as their fall booster and recently released neutralization results on non-human primates (Macaques) including a more recent KP.2 FLiRT variant. 🧵1/
Graph of JN.1 vaccine neutralizing response against JN.1 and JN.1 subvariants in non-human primates (macaques)
Graph of Novavax JN.1 Vaccine Neutralization Dose Schedule
Recall that the JN.1 variant became dominant in many parts of the world in December 2023 so by the time the fall 2024 vaccine program rolls out it will be almost a year old. 2/
Lets look more closely at the neutralization results that Novavax did provide in slide 14 of their investor presentation on May 10th ( ). 3/novavax.widen.net/s/gvwfqkhbhm/2…
Read 34 tweets
May 20
Indoor Air Quality: Wildfire Smoke & Cooking

With wildfire smoke season here, we all need to think about air quality inside where we spend most of our time. This thread provides multiple examples measuring the air quality inside my home from wildfire smoke and cooking. 🧵1/

Wildfire smoke making it difficult to see buildings in New York City from ( https://www.theguardian.com/environment/2023/jun/08/air-quality-record-smoke-hazard-wildfire-worst-day-ever-canada-new-york ).
Graph of PM 2.5 Wildfire Smoke Pollution Levels Inside & Outside House with significantly higher levels of PM outside and in garage, and higher levels of PM in unfinished sections of basement with very little PM in finished rooms and those with HEPA filters.
Graph from co2.click portal showing a massive spike in particulate matter (PM) levels past 50 ug/m3 on Christmas Eve. More info at: https://co2.click/
The web version of this article with nice table of contents and easy to share with others can be found here ( ) or ( ). 2/ tinyurl.com/AirQualityPoll…
docs.google.com/document/d/1x0…
Image
Particulate Matter (PM) Pollution

People now spend the vast majority of the time indoors. Adults in the USA with a 79 year life expectancy will spend on average 69 years inside of buildings and 54 of those years inside their own homes/residences ( ). 3/nap.nationalacademies.org/catalog/27341/…
Read 84 tweets
May 13
#Variant update for #Ontario, #Canada (to May 12 2024)

The JN.1.* +FLiRT variants now make up 27% of sequences and XDK.* which is recombinant of JN.1.1.1 and XBB.1.16.11 is remaining at 5% for now. Graph tools by @Mike_Honey_ 🧵1/
Sankey graph (height of each bar is # of sequences for that variant) showing top variants and their lineages over the past couple of months from PCR test genomic sequencing in Ontario, Canada. Visualization tool was created by @Mike_Honey_ ( https://app.powerbi.com/view?r=eyJrIjoiNzE5YzczODItMDQzMS00M2EzLWFjNWYtMjg3OTY3NTNhZDM3IiwidCI6ImRjMWYwNGY1LWMxZTUtNDQyOS1hODEyLTU3OTNiZTQ1YmY5ZCIsImMiOjEwfQ%3D%3D&pageName=ReportSection32240d6b62ba73667e98 )
Graph of top 7 COVID variant clans from PCR test genomic sequencing in Ontario, Canada. Visualization tool was created by @Mike_Honey_ ( https://app.powerbi.com/view?r=eyJrIjoiNzE5YzczODItMDQzMS00M2EzLWFjNWYtMjg3OTY3NTNhZDM3IiwidCI6ImRjMWYwNGY1LWMxZTUtNDQyOS1hODEyLTU3OTNiZTQ1YmY5ZCIsImMiOjEwfQ%3D%3D
JN.1 #Pirola has dropped to 7% frequency and JN.1.4 down to 9% while KP.3 FLuQE is now most prevalent at 26% while the FLiRT variants are much lower at KP.2 (6%) and KS.1 (5%). 2/ Graph of top 8 COVID variants (JN.1, JN.1.4, JN.1.7, JN.1.8.1, KP.2, KP.3, KS.1) from PCR test genomic sequencing in Ontario, Canada. Visualization tool was created by @Mike_Honey_ ( https://app.powerbi.com/view?r=eyJrIjoiNzE5YzczODItMDQzMS00M2EzLWFjNWYtMjg3OTY3NTNhZDM3IiwidCI6ImRjMWYwNGY1LWMxZTUtNDQyOS1hODEyLTU3OTNiZTQ1YmY5ZCIsImMiOjEwfQ%3D%3D )
KP.3 has the F456L and Q493E mutations (FLuQE nickname) while the FLiRT variants have the same F456L mutation but a different R346T mutation. Ryan Hisner explains how FLiRT is a typical stepwise mutation but Q493E is very rare and may be different ( ). 3/
Chart of BA.2.86* variant convergence and latest FLiRT and FLuQE/SLuQE mutations. Chat by @dfocosi ( https://twitter.com/dfocosi/status/1789535645515313244 )
Read 15 tweets
Apr 29
People are rightfully concerned about the high case fatality rate (CFR) of the H5N1 influenza virus but did you know fatalities from COVID infection (which already spreads easily between humans) with the elderly are as high as 40% ( )? 🧵1/
Virus infection can damage the body, we have seen this with Long COVID and this can happen with other viruses as well such as Influenza causing increased risk of cardiovascular events among other things. 2/
This study tries to indirectly measure the impact of influenza infection by looking at cardiovascular events and then measuring the risk people had if they received the influenza vaccine or not( … ). 3/ H/T: @JaninePaynterncbi.nlm.nih.gov/pmc/articles/P…
Read 12 tweets
Apr 28
#Variant update for #Ontario, #Canada (to Apr. 17, 2024)

The JN.1.* +FLiRT variants now make up 20% of sequences and XDK.* which is recombinant of JN.1.1.1 and XBB.1.16.11 has made an appearance at 5%. Graph tools by @Mike_Honey_ 🧵1/
Sankey graph (height of each bar is # of sequences for that variant) showing top variants and their lineages over the past couple of months from PCR test genomic sequencing in Ontario, Canada. Visualization tool was created by @Mike_Honey_ ( https://app.powerbi.com/view?r=eyJrIjoiNzE5YzczODItMDQzMS00M2EzLWFjNWYtMjg3OTY3NTNhZDM3IiwidCI6ImRjMWYwNGY1LWMxZTUtNDQyOS1hODEyLTU3OTNiZTQ1YmY5ZCIsImMiOjEwfQ%3D%3D&pageName=ReportSection32240d6b62ba73667e98 )
Graph of top 7 COVID variant clans from PCR test genomic sequencing in Ontario, Canada. Visualization tool was created by @Mike_Honey_ ( https://app.powerbi.com/view?r=eyJrIjoiNzE5YzczODItMDQzMS00M2EzLWFjNWYtMjg3OTY3NTNhZDM3IiwidCI6ImRjMWYwNGY1LWMxZTUtNDQyOS1hODEyLTU3OTNiZTQ1YmY5ZCIsImMiOjEwfQ%3D%3D
FLiRT is a nickname for variants with F456L & R356T mutations which seem to provide an advantage over the JN.1 Pirola variants without them. You can see the current FLiRT variants here from @dfocosi. 2/ Chart of BA.2.86* variant convergence and latest FLiRT mutations. Chat by @dfocosi ( https://twitter.com/dfocosi/status/1780183036853690596 )
JN.1 #Pirola has dropped to around 20% frequency and JN.1.4 is hovering at 14% while the FLiRTs are gaining: KS.1 at 10%, KP.1.1 at 4%, KP.2 at 3% and XDK.1 at 4%. 3/ Graph of top 8 COVID variants (JN.1, JN.1.16.1, JN.1.4, KP.1.1, KP.2, KS.1, XDK.1) from PCR test genomic sequencing in Ontario, Canada. Visualization tool was created by @Mike_Honey_ ( https://app.powerbi.com/view?r=eyJrIjoiNzE5YzczODItMDQzMS00M2EzLWFjNWYtMjg3OTY3NTNhZDM3IiwidCI6ImRjMWYwNGY1LWMxZTUtNDQyOS1hODEyLTU3OTNiZTQ1YmY5ZCIsImMiOjEwfQ%3D%3D )
Read 17 tweets

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