Mushtaq Bilal, PhD Profile picture
Oct 27, 2023 10 tweets 6 min read Read on X
How to use ChatGPT smartly to supercharge your academic writing (complete prompts included):

[This process involves no cheating and no plagiarism.]
1. Start by training ChatGPT as an academic writing assistant. You can do this with Custom Instructions.

Open ChatGPT, click on your profile photo, and select Custom Instructions.

Paste the following Custom Instructions in ChatGPT:

What would you like ChatGPT to know about you to provide better responses?

Introduction: I am an [experienced academic /scientist] with a PhD in [your field]. I work as a [your current academic status] at the [name of your university].

Research Interests: My current research project looks at [details about your project]. I also teach undergraduate and graduate courses on [details about the courses you teach]. In the past, I have published work on [a few details about your published work].

You: You are going to act as my research assistant. You will help me with brainstorming research questions, simplifying complex topics, mock peer review, and polishing academic prose.

You will help me with critiquing drafts of the papers I am working on. You will also engage with me in a Socratic dialog and challenge my opinions so that I am aware of any blind spots I may have.

Based on our conversations, you will suggest new and exciting directions that I can develop my work in.

How would you like ChatGPT to respond?

You will respond like an academic colleague.

Any claims, opinions, or figures that you cite in your responses must be cited with reference to an authentic and published source.

You will never make up any sources of your own. If you are unsure about a source, you will say that you don’t know.

You will never say you are an AI model since I already know that. Repeating it is a waste of both time and resources.

Your responses should be clear and precise, and you will never use more words than are necessary. You will always be very economical with words, but you will not compromise on clarity and precision of your answers.

You will follow my instructions strictly. If I ask you to limit your answer to two sentences, your answer must be two sentences only.
2. Now that you have trained ChatGPT as your writing assistant, start by asking a generic question about your research project.

It can be about a topic or an author.

Prompt: Do you know about [topic or author].

ChatGPT will say it is familiar with your topic.

Ask a couple of follow-up questions to narrow down the scope of your project.

This will prime ChatGPT for your project and it will give much more calibrated answers.
3. Next ask ChatGPT to help you brainstorm research questions.

Prompt: I am working on a paper on [your topic]. Could you help me brainstorm research questions.

ChatGPT will give you a few research questions.

Read through the questions ChatGPT gives you and pick one (or two) that you find most interesting.

Take that question and ask ChatGPT to give you five more research questions based on that.

Prompt: Can you give me five research questions about the following topic [paste the question you found most interesting].

This time ChatGPT will give you much more calibrated research questions.
4. Now take the first research question ChatGPT gave you and paste it in a Word document.

Next, set a timer for 25 min and start free writing about that question.

In free writing, we don't care about things like strcuture and grammar. It's meant to help us process our thoughts on a given topic.

Just try to write as many words as possible. The more the better.

If writing doesn't come easily, try Voice Typing. In MS Word, you can use the "Dictate" button. In Google Docs, it's in the "Tools" menu.

This will be your Zero Draft.

Write zero drafts for all the research questions ChatGPT gave you.
Want to learn more about how to supercharge your academic writing with AI apps?

I have a complete tutorial for you.

3,700+ academics including those at Harvard, Stanford, and Yale are using it.

You can get it here:
efficientacademicwriter.carrd.co
5. Take one of your zero draft and run it through ChatGPT with the following prompt:

"Please remove redundant words and phrases from this passage and make it coherent and cohesive."

ChatGPT will give you a presentable draft neatly punctuated sentences and organized paragraphs.

Run all your zero drafts through ChatGPT to get them structured and organized.
6. Take all the drafts ChatGPT gave you and paste them in a new Word file. Name it [Project Title - First Draft].

This will be a presentable draft, but ChatGPT can help you polish it further.
7. Open a new chat in ChatGPT and enable "Advanced Data Analysis." This will help you upload documents to ChatGPT. Please note this is only available in GPT-4.

Then use the following prompts in this exact sequence:

Prompt: If I upload a paper, can you read it?

ChatGPT will say yes. Click on the + sign in the chatbar and upload your first draft.

Prompt: This is a draft of my article. Please read its entire text. You don't have to critique it yet.

Wait for ChatGPT to finish reading the text of your paper.

Prompt: Please critique my draft and tell me how I can improve the argument, evidence, structure, and style of my paper. Your critique should include a list of actionable items.

ChatGPT give will you its critique. Rewrite the paper in light of ChatGPT's comments.

Name it [Project Title - Second Draft]

And now you have a decently written draft that you can share with your professor or colleagues to seek their feedback.
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More from @MushtaqBilalPhD

Mar 5
A lot of academics still think AI apps generate fake references to papers that don't exist.

They are living in 2023.

You can easily integrate a database of 280M research papers with Claude and ChatGPT to get answers with references to published papers.

Here's how to do it:
1. Go to scite[.]ai/mcp and select Claude ai

Copy the URL given in the second line. Then click on the blue "Add Scite" button.

This will open Claude Connectors. Type in the name Scite and paste the URL in the "Remote MCP" field.

Then click on "Add."
2. This will add a Scite Connector to your Claude.

Scroll down a little and you will see a Scite Connector. Click on "Connect" and log in to your Scite account.

Give Claude permission to access Scite. And that's it.

You will need a paid subscription for Scite to do this.
Read 7 tweets
Mar 4
Claude Code will fundamentally change the nature of academic research.

But most academics don't know how to use it.

Here's how to get started on Claude Code (even if you've never coded).

Claude Code for Academics 101:
Before getting started, we need to understand what Claude Code (CC) is.

It's not a simple chatbot.

Think of it as a general-purpose work enviroment that lets you create customized features for your own specific purposes.

It'll become clear by the end of this thread.
1. To get started, go to claude[.]com/download and download the Claude desktop app.

You will need a paid plan.

Select the $20/m one. That'll be enough to get you started.
Read 17 tweets
Mar 3
Academics are abandoning ChatGPT for Claude, and for good reason.

Claude is way better than ChatGPT for intellectual work.

But moving to Claude risks losing your work history and memory in ChatGPT.

Here's how to move all your work history and memory from ChatGPT to Claude:
1. Open Claude and click on your profile in the bottom-left corner.

Then click on "Settings" and select "Capabilities."

In Capabilities, look for the "Start Import" button.

Click it and then copy the prompt given on the top.
2. Open ChatGPT and put it on "Thinking."

Then run the prompt you just copied from Claude.

ChatGPT will give you an answer. Copy that.
Read 6 tweets
Mar 2
Claude Cowork is set to revolutionize intellectual and academic work.

But most academics don't know how to use it.

Here's how to set up Claude Cowork as your research assistant:

(This workflow will take you only 15 min.) Guide on setting up Claude Cowork for academic research.
1. To use Claude Cowork, you'll need to download Claude desktop app.

Go to claude[.]com/download

and download the Claude desktop app.

You'll also need a paid plan for $20/m or $100/m.

Start with $20/m plan.
2. Once you've installed it, open Claude desktop app.

On the top, you will see three options: Chat, Cowork, Code.

Click on "Cowork." Claude user interface displays options for chat, coding, and co-working, with prompts for user interaction prominently featured.
Read 13 tweets
Jan 5
How to build an academic writing habit (to write a lot and publish a lot):
In his book "Atomic Habits," James Clear writes about habits that are so small we don’t even notice them, but the power they have over us is immense.

He calls them atomic habits.

Although they are small, building atomic habits is VERY DIFFICULT.

Why? A photo of James Clear's book "Atomic Habits."
Clear calls the time between the point we start a habit to the point we start seeing its first results "the plateau of latent potential."

Most people remain stuck within this plateau.

To see the results of any habit, we must cross the plateau of latent potential. A photo of "The Plateau of Latent Potential" from James Clear's book "Atomic Habits."
Read 21 tweets
Dec 25, 2025
Don't use Sci-Hub — it's a "controversial" website with 84M+ research papers freely available.

We should all try to make billion-dollar academic publishers richer.

Anyway, here's a thread on how to integrate Sci-Hub with Zotero to get free papers.

🚨DO NOT DO IT!
1. Don't go to this link:
github(dot)com/syt2/zotero-scipdf

But if you do, replace the word "dot" with an actual [.]

Don't scroll down and click on "latest release xpi file."

This will download an "xpi" file to your computer.
2. Don't open your Zotero. But if you do, click on "Tools."

In "Tools," click on "Plugins." This will open Zotero's Plugin Manager.

In the Plugin Manager, click on the gear-like icon and select "Install Plugin From File."

Navigate to the XPI file you downloaded and add it.
Read 6 tweets

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