BREAKING🔔 A new study from G2P-Japan🇯🇵 is out at bioRxiv @biorxivpreprint. We elucidated the virological characteristics of SARS-CoV-2 BA.2.86 (aka #Pirola).
*BA.2.86 is has >30 mutations in the genome.
Please RT🔥 1/ biorxiv.org/content/10.110…
Epidemic dynamics modeling by @jampei2 and @JarelElgin showed that the relative effective reproduction number (Re) of BA.2.86 is 1.07-fold higher than that of the currently predominant EG.5.1, suggesting that BA.2.86 has the potential to become the next predominant one. 2/
Growth assay showed that the replication capacity of BA.2.86 is similar to or lower than that of BA.2, its parental strain. BA.2.86 is less replicative than EG.5.1 at the cell culture level. 3/
Four antivirals, molnupiravir (EIDD-1931), nirmatrelvir, remdesivir and ensitrelvir were all effective against BA.2.86. 4/
A cell-based fusion assay showed that the fusogenicity of BA.2.86 spike is a bit (1.5-fold) greater than that of the parental BA.2 spike. 5/
Infection experiments in hamsters showed that both the intrinsic pathogenicity and replication kinetics of BA.2.86 are significantly lower than those of the parental BA.2. 6/
Overall, BA.2.86 does not appear to pose an increased risk to human society. However, it is possible that its virological phenotype may change or even worsen in the future by acquiring additional mutations. Continued monitoring and surveillance are important now and then. 7/7
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BREAKING🔔 The 50th🎉 paper from G2P-Japan🇯🇵 is out at Lancet Infectious Diseases
@TheLancetInfDis. We elucidated the virological characteristics of SARS-CoV-2 LP.8.1. Please repost🔥 1/ thelancet.com/journals/lanin…
In spike, LP.8.1 has 9 mutations (S31del, F186L, R190S, R346T, V445R, F456L, Q493E, K1086R, and V1104L) compared with JN.1; and 8 amino acid residues (T22N, S31del, F59S, F186L, R190S, R346T, H445R, and K1086R) differ between the spike proteins of LP.8.1 and XEC. 2/
Transmissibility/fitness (Re):
Epidemic dynamics modeling led by Jumpei @jampei2 and Kaho showed that the Re of LP.8.1 is ~1.1-fold higher than that of XEC in 🇺🇸. However, the Re of LP.8.1 and XEC were almost comparable in 🇯🇵. Difference between countries🤔?? 3/
BREAKING🔔 A new study from G2P-Japan🇯🇵, led by Keiya @Keiya717, is out at @biorxivpreprint. We assessed the humoral immunity induced by JN.1 mRNA vaccines against a broad range of SARS-CoV-2 variants including JN.1, KP.3.1.1 & XEC. Please repost🔥 1/ biorxiv.org/content/10.110…
In this study, we used 2 mRNA vaccines, one is from Pfizer/BioNTech🇺🇸🇩🇪, while another is from Daiichi-Sankyo🇯🇵. The good news is that there are no significant differences between them and both broadly neutralized a variety of SARS-CoV-2 including JN.1, KP.3.1.1 and XEC. 2/
But there are two scientific interests.
First, compared to our recent study using JN.1 and KP.3.3 breakthrough (i.e. natural) infection sera, antiviral humoral immunity against KP.3 and XEC was weakly induced. However, JN.1 mNRA vaccine can. Why🤔?? 3/
BREAKING🔔 A new study from G2P-Japan🇯🇵, led by Yu in my lab, is out at bioRxiv @biorxivpreprint. We elucidated the virological characteristics of SARS-CoV-2 #XEC. Please repost🔥 1/ biorxiv.org/content/10.110…
Compared with KP.3, #XEC harbors two spike substitutions, S:T22N and S:F59S. Recombination analysis by Shusuke @KawakuboShusuke showed that XEC is a recombinant lineage of KS.1.1 (JN.13.1.1.1) and KP.3.3 (JN.1.11.1.3.3) with a breakpoint at genomic position 21,738–22,599. 2/
Transmissibility/fitness (Re):
Molecular phylogenetic-epidemic dynamics modeling led by Jumpei @jampei2 and Kaho showed that the Re of #XEC is greater than that of KP.3.1.1, the most predominant variant in the world. 3/
BREAKING🔔 Here I want to quickly report our new results from G2P-Japan🇯🇵 before the preprint publication. We have elucidated the virological characteristics of SARS-CoV-2 KP.3.1.1 - a progeny of JN.1. Please RT🔥 1/
Cf.1 A new one, KP.2 (JN.1.11.1.2), has been already elucidated. 2/