Mushtaq Bilal, PhD Profile picture
Nov 26, 2023 14 tweets 5 min read Read on X
Zotero is the best citation and reference management app.

It's totally free.

But many folks don't know how to use it.

Here's a tutorial on how to automate your citations and references with Zotero:
1. Go to zotero(dot)org.

Download "Zotero 6" and install the app on your computer.
2. You will also need to install the Zotero Connector. It will connect your Zotero desktop app with your browser.

Click on "Install Chrome Connector" and add it to your browser.

Once it's added. click on the puzzle-like icon and pin the Zotero Connector to your browser.
3. You will also need to create a Zotero account. Click on "Log In" and then "Register for a free account."

This will give you an online backup of your Zotero library.
4. Open your Zotero desktop app.

Click on "File" and select "New Collection."

Choose a name for your collection.
5. Go to Google Scholar or Pubmed or your university's online library and look up articles using keywords.

You will get a list of relevant search results.

Click on the Zoteor Connector in the top-right corner and it will open an Item Select.

Select the articles/books you think are relevant to your project and click "OK."

Zotero will save these items in the collection you just created.

Go to your Zotero and you will all the items in the collection.

Zotero will automatically retrieve open access PDFs of articles.

If you are signed in to your univeristy's library, it will also access paywalled articles and add them to your collection.
6. You can also items manually. To do so, simply drag and drop PDFs in your collection.

Zotero will retrieve their metadata and add it to your collection.
7. You can read an article in Zotero and also take notes on it.

Double-click the article you want to read and Zotero will open it for you.

You can highlight and annotate the article. You can also write lengthy notes in Zotero's Note Editor.
Want to learn how to supercharge your academic writing with AI apps?

I have a complete tutorial for you.

4,300+ academics including those at Harvard, Stanford, and Yale are using it.

You can get it here👇
efficientacademicwriter.carrd.co
8. Open your MS Word and start drafting your paper.

To add a citation, place the cursor where you want to add it. Open the Zotero tab and click on "Add/Edit Citation."

Zotero will open a red search bar for you. Type in the name of the author you want to cite and Zotero will prepare the citation for you.

You can add the page number if you want to.
9. Zotero is also available for Google Docs.

The interface is a little different than MS Word but the functionality is the same.
10. Once you are done drafting, place the cursor where you want to add your bibliography.

Then click on "Add/Edit Bibliography" and Zotero will add the properly formatted bibliography for you.
Found this thread on Zotero helpful?

1. Scroll to the top and hit Like on the first tweet.

2. Bookmark it so you can come back to it later.

3. Follow me for more threads on academic writing.
Want me to email you tips on academic writing?

Sign up for my newsletter. It's FREE!

mushtaq-bilal-phd.ck.page/4fa4d9ca35

• • •

Missing some Tweet in this thread? You can try to force a refresh
 

Keep Current with Mushtaq Bilal, PhD

Mushtaq Bilal, PhD Profile picture

Stay in touch and get notified when new unrolls are available from this author!

Read all threads

This Thread may be Removed Anytime!

PDF

Twitter may remove this content at anytime! Save it as PDF for later use!

Try unrolling a thread yourself!

how to unroll video
  1. Follow @ThreadReaderApp to mention us!

  2. From a Twitter thread mention us with a keyword "unroll"
@threadreaderapp unroll

Practice here first or read more on our help page!

More from @MushtaqBilalPhD

May 2
How to set up your personal, AI-powered, research management system using Claude Code

A steo-by-step tutorial:
1. Go to obsidian[.]md

Download and install the app on your computer.
2. Once installed, Obsidian will ask you to create a "Vault" (folder on your computer).

Create a vault called "MyWiki" and save it in your Documents.

Once your vault is created, Obsidian will open it for you.

Don't be intimidated by what you see. It's very easy to use.
Read 16 tweets
Apr 27
Sci-Hub is an evil website that pirated 85M+ research papers and made them freely available

And now they've added AI to their database to make Sci-Bot.

It answers your questions using latest, full-text articles.

But DO NOT use it. We should all try to make billion-dollar academic publishers richer.

I'm putting the link below so you know how to avoid it.
Some colleagues are reporting very long wait times (90-120 min).

Not sure what's going on, because I just ran a search and it gave me a decent response in less than 8 minutes.

Keep in mind that it's probably using full-text papers and not abstracts like most AI apps.
Read 7 tweets
Apr 26
How to make AI-generated text 100% human with Claude Code:

PS: we're cooked A screenshot of Claude Code and Pangram windows placed side by side.
1. To humanize AI-generated text, you'll need a Claude Skill called "humanizer"

github[.]com/blader/humanizer

It detects 29 patterns of AI writing and removes them.
2. Press the Windows key on your computer and type "PowerShell."

This will open a black screen. This is your PowerShell.

Go the Claude Skills directory by using the following command:

cd C:\Users\YOUR USERNAME\.claude\skills

Type your user name in the above command.
Read 6 tweets
Apr 20
Screening titles and abstracts for your systematic literature review is a very time-consuming process.

Researchers have to screen thousands of papers.

You can use Claude Code to automate the screening process with accuracy:

Here's how to do it:
1. Create a folder on your computer, "systematic review"
2. Run a search in PubMed or any other database.

Download a PubMed or RIS file of the search results.

Be sure to include abstracts when you download.

Name it "abstractsforscreening"
Read 9 tweets
Apr 18
Codex is one of the most powerful AI agents for research work.

But most academics don't know how to get started on it. They're still stuck with ChatGPT.

Here's a step-by-step tutorial to help you get started on Codex.

Codex 101 for academics: A screenshot of the Codex landing page.
1. Go to openai[.]com/codex

Download and instal the Codex app on you computer.

Unlike ChatGPT that you use in your browser, Codex is a desktop app.

Don't be intimidated by its name. You don't need any coding experience to use it.
2. When you open it for the first time, it will create a folder "Playground" on your computer.

Everything you do here will be saved in Playground. You can, of course, change the folder.

For serious academic work, choose the lastes model (GPT-5.4) with "Extra High" Reasoning
Read 12 tweets
Apr 8
Karpathy's idea of LLM Knowledge Bases went viral: 18M+ views.

Now everyone wants to build one but many are facing problems, especially non-technical folks.

Here is a step-by-step tutorial on setting up an LLM Knowledge Base for non-technical folks: A tweet by Andrej Karpathy discusses using LLMs for personal knowledge bases, achieving 18.3M views and highlighting user challenges.
1. Go to obsidian[.]md

Download and install the app on your computer.
2. Once installed, Obsidian will ask you to create a "Vault" (folder on your computer).

Create a vault called "MyWiki" and save it in your Documents.

Once your vault is created, Obsidian will open it for you.

Don't be intimidated by what you see. It's very easy to use.
Read 16 tweets

Did Thread Reader help you today?

Support us! We are indie developers!


This site is made by just two indie developers on a laptop doing marketing, support and development! Read more about the story.

Become a Premium Member ($3/month or $30/year) and get exclusive features!

Become Premium

Don't want to be a Premium member but still want to support us?

Make a small donation by buying us coffee ($5) or help with server cost ($10)

Donate via Paypal

Or Donate anonymously using crypto!

Ethereum

0xfe58350B80634f60Fa6Dc149a72b4DFbc17D341E copy

Bitcoin

3ATGMxNzCUFzxpMCHL5sWSt4DVtS8UqXpi copy

Thank you for your support!

Follow Us!

:(