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Apr 29 โ€ข 9 tweets โ€ข 3 min read โ€ข Read on X
๐—ž๐—ฒ๐˜† ๐˜€๐˜๐˜‚๐—ฑ๐˜† ๐Ÿ‘
"๐—ง๐—ต๐—ฒ ๐—ฎ๐—ถ๐—ฟ๐—ฏ๐—ผ๐—ฟ๐—ป๐—ฒ ๐˜๐—ฟ๐—ฎ๐—ป๐˜€๐—บ๐—ถ๐˜€๐˜€๐—ถ๐—ผ๐—ป ๐—ผ๐—ณ ๐˜ƒ๐—ถ๐—ฟ๐˜‚๐˜€๐—ฒ๐˜€ ๐—ฐ๐—ฎ๐˜‚๐˜€๐—ฒ๐˜€ ๐˜๐—ถ๐—ด๐—ต๐˜ ๐˜๐—ฟ๐—ฎ๐—ป๐˜€๐—บ๐—ถ๐˜€๐˜€๐—ถ๐—ผ๐—ป ๐—ฏ๐—ผ๐˜๐˜๐—น๐—ฒ๐—ป๐—ฒ๐—ฐ๐—ธ๐˜€"

nature.com/articles/s4146โ€ฆ
Image
2) The transmission bottleneck refers to the number of viral particles that initiate an infection in a new host. Past studies have suggested for viruses like influenza and SARS-CoV-2, it usually involves just a few particles.
3) The authors developed mathematical models to simulate the physical process of airborne viral transmission through coughing/breathing. Factors like particle emission/diffusion, evaporation, sedimentation, ventilation and virus inactivation over time were accounted for. Image
4) Across different environments modeled (office, bus, nightclub, lounge), the simulations predicted that tight transmission bottlenecks prevail in most cases, with the majority of infections initiated by a single viral particle. Image
5) Exceptions were predicted at very high effective viral loads (much higher than estimates for SARS-CoV-2), where a single inhaled particle could carry multiple viruses. Another exception was very high particle emission volumes combined with high viral loads. Image
6) The results provide a physical explanation for past inferences of small bottlenecks from genomic studies, and predict tight bottlenecks are more generally expected in respiratory virus spread through the air. Image
7) The findings were robust to variations in modeling parameters and assumptions, lending support that tight bottlenecks dominate airborne transmission through routine respiratory behaviors like coughing and breathing.
8) In summary, the article presents computational models simulating airborne viral spread that independently predict tight transmission bottlenecks are the norm, except in rare high exposure scenarios ...
9) ...providing further evidence this is a general feature of respiratory virus evolution.

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More from @ejustin46

May 1
๐—ž๐—ฒ๐˜† ๐˜€๐˜๐˜‚๐—ฑ๐˜† :
๐™‡๐™ž๐™ฃ๐™ ๐™จ ๐™—๐™š๐™ฉ๐™ฌ๐™š๐™š๐™ฃ ๐™Ž๐™š๐™ซ๐™š๐™ง๐™š ๐˜พ๐™Š๐™‘๐™„๐˜ฟ-19 ๐™–๐™ฃ๐™™ ๐™๐™ฃ๐™™๐™š๐™ฉ๐™š๐™˜๐™ฉ๐™š๐™™ ๐˜พ๐™–๐™ฃ๐™˜๐™š๐™ง ๐Ÿ˜จ

๐˜‹๐˜ข๐˜ต๐˜ข ๐˜ฐ๐˜ฏ ๐˜ฐ๐˜ท๐˜ฆ๐˜ณ 41000 ๐˜ฑ๐˜ข๐˜ต๐˜ช๐˜ฆ๐˜ฏ๐˜ต๐˜ด !
H/t @FLAHAULT
nature.com/articles/s4159โ€ฆ
Image
2) This study aimed to investigate whether a severe SARS-CoV-2 infection represents a marker of an underlying undiagnosed cancer. It used France's national healthcare database to analyze data on over 41,000 people hospitalized for COVID-19 and matched controls. Image
3) The COVID-19 patients had a 31% higher risk of being diagnosed with cancer in the following months compared to controls, after adjusting for confounding factors.
The association was stronger when looking just at the first 3 months after hospitalization. It was also higher ..
Read 7 tweets
May 1
๐—ž๐—ฒ๐˜† ๐˜€๐˜๐˜‚๐—ฑ๐˜† ๐Ÿ‘๐Ÿ‘๐Ÿ‘
๐—” ๐—ฐ๐—ผ๐—บ๐—ฝ๐—ฟ๐—ฒ๐—ต๐—ฒ๐—ป๐˜€๐—ถ๐˜ƒ๐—ฒ ๐—ฟ๐—ฒ๐˜ƒ๐—ถ๐—ฒ๐˜„ ๐—ผ๐—ณ ๐—ต๐—ถ๐—ด๐—ต๐—น๐˜† ๐—ฝ๐—ฎ๐˜๐—ต๐—ผ๐—ด๐—ฒ๐—ป๐—ถ๐—ฐ ๐—ฎ๐˜ƒ๐—ถ๐—ฎ๐—ป ๐—ถ๐—ป๐—ณ๐—น๐˜‚๐—ฒ๐—ป๐˜‡๐—ฎ (๐—›๐—ฃ๐—”๐—œ) ๐—›5๐—ก1: ๐—”๐—ป ๐—ถ๐—บ๐—บ๐—ถ๐—ป๐—ฒ๐—ป๐˜ ๐˜๐—ต๐—ฟ๐—ฒ๐—ฎ๐˜ ๐—ฎ๐˜ ๐—ฑ๐—ผ๐—ผ๐—ฟ๐˜€๐˜๐—ฒ๐—ฝ

(published in Oct. 2023)
sciencedirect.com/science/articlโ€ฆ
Image
2) H5N1 is a subtype of influenza A virus that can cause severe disease in humans and is often fatal. It first emerged in humans in 1997 in Hong Kong.
Since 2003, over 800 human cases have been reported worldwide.
Most cases have occurred in Southeast Asia.
3) H5N1 viruses have evolved into multiple clades, with clade 2.3.4.4 currently circulating widely and causing outbreaks in birds globally.
The virus spreads between birds through contact with infected secretions/excretions. While rare, human infections ... Image
Read 8 tweets
May 1
๐˜ฟ๐™ฎ๐™ฃ๐™–๐™ข๐™ž๐™˜ ๐™™๐™ž๐™ซ๐™š๐™ง๐™จ๐™ž๐™ฉ๐™ฎ ๐™ค๐™› ๐™Ž๐˜ผ๐™๐™Ž-๐˜พ๐™ค๐™‘-2 ๐™œ๐™š๐™ฃ๐™š๐™ฉ๐™ž๐™˜ ๐™ข๐™ช๐™ฉ๐™–๐™ฉ๐™ž๐™ค๐™ฃ๐™จ ๐™ž๐™ฃ ๐™– ๐™ก๐™ช๐™ฃ๐™œ ๐™ฉ๐™ง๐™–๐™ฃ๐™จ๐™ฅ๐™ก๐™–๐™ฃ๐™ฉ๐™–๐™ฉ๐™ž๐™ค๐™ฃ ๐™ฅ๐™–๐™ฉ๐™ž๐™š๐™ฃ๐™ฉ ๐™ฌ๐™ž๐™ฉ๐™ ๐™ฅ๐™š๐™ง๐™จ๐™ž๐™จ๐™ฉ๐™š๐™ฃ๐™ฉ ๐˜พ๐™Š๐™‘๐™„๐˜ฟ-19

nature.com/articles/s4146โ€ฆ
Image
2) This study reports a case of a lung transplant patient who developed a chronic persistent SARS-CoV-2 infection despite remdesivir (RDV) treatment.
Whole genome sequencing revealed the virus accumulated diverse mutations over time, particularly in the spike protein ... Image
3) ...and RNA-dependent RNA polymerase (RdRp).
Several mutations in RdRp (V792I, M794I, C799F) emerged after RDV treatment and were associated with increased RDV resistance. In particular, the C799F mutation conferred the highest level of resistance. Image
Read 7 tweets
Apr 30
๐™ƒ5๐™‰1 ๐˜ผ๐™‘๐™„๐˜ผ๐™‰ ๐™„๐™‰๐™๐™‡๐™๐™€๐™‰๐™•๐˜ผ :
๐™ƒ๐™ค๐™ฌ ๐™ƒ5๐™‰1 ๐™ž๐™จ ๐™๐™๐˜ผ๐™‰๐™Ž๐™ˆ๐™„๐™๐™๐™€๐˜ฟ ?
๐™’๐™๐™–๐™ฉ ๐™–๐™ง๐™š ๐™ฉ๐™๐™š ๐™๐™„๐™Ž๐™† ๐™›๐™ค๐™ง ๐™ƒ๐™๐™ˆ๐˜ผ๐™‰๐™Ž ?
(2๐˜ฏ๐˜ฅ ๐˜ฑ๐˜ข๐˜ณ๐˜ต)
โ–ถ๏ธ Underestimation of cases
โ–ถ๏ธ Overestimation of fatality rate
2) ๐™๐™ฃ๐™™๐™š๐™ง๐™š๐™จ๐™ฉ๐™ž๐™ข๐™–๐™ฉ๐™ž๐™ค๐™ฃ ๐™ค๐™› ๐™˜๐™–๐™จ๐™š๐™จ :
"We are underestimating, again, the true burden of H5N1 in humans"


Clade 2.3.4.4b H5N1 avian influenza viruses have spread globally since 2020, causing major outbreaks in poultry and ...ncbi.nlm.nih.gov/pmc/articles/Pโ€ฆ
3) ...infecting a wide range of mammal species.
The true number of human H5N1 infections from this strain is unknown but likely significantly underestimated, especially as the viruses can infect mammals. Only 12 cases have been reported to WHO since 2020.
Read 11 tweets
Apr 30
๐™ƒ5๐™‰1 ๐˜ผ๐™‘๐™„๐˜ผ๐™‰ ๐™„๐™‰๐™๐™‡๐™๐™€๐™‰๐™•๐˜ผ :
๐™ƒ๐™ค๐™ฌ ๐™ƒ5๐™‰1 ๐™ž๐™จ ๐™๐™๐˜ผ๐™‰๐™Ž๐™ˆ๐™„๐™๐™๐™€๐˜ฟ ?
๐™’๐™๐™–๐™ฉ ๐™–๐™ง๐™š ๐™ฉ๐™๐™š ๐™๐™„๐™Ž๐™† ๐™›๐™ค๐™ง ๐™ƒ๐™๐™ˆ๐˜ผ๐™‰๐™Ž ?
(1๐˜ด๐˜ต ๐˜ฑ๐˜ข๐˜ณ๐˜ต)
... qnd why the nb of humans cases are underestimated, and consequently the fatality rate overestimated ? Image
2) We would first like to take a step back, and remember that the circulation of H*N* is an ancient story :

Fig. Possible origins of pandemic influenza viruses. Phylogenetic studies suggest that an avian influenza virus was transmitted to humans, leading to the 1918 pandemic Image
3) For the H5N1 that we have been following for a long time, the clade we are currently talking about emerged in 2021 ! Image
Read 16 tweets
Apr 30
๐™‹๐™ค๐™จ๐™ฉ-๐˜พ๐™Š๐™‘๐™„๐˜ฟ-19 ๐™จ๐™ฎ๐™ฃ๐™™๐™ง๐™ค๐™ข๐™š, ๐™ฌ๐™๐™ค ๐™–๐™ฉ ๐™ง๐™ž๐™จ๐™  ๐™–๐™ฃ๐™™ ๐™ฌ๐™๐™ฎ: ๐™–๐™ฃ ๐™ž๐™ฃ๐™จ๐™ž๐™œ๐™๐™ฉ ๐™›๐™ง๐™ค๐™ข ๐™Œ๐™–๐™ฉ๐™–๐™ง 2022

"Out of 368, the prevalence of post-COVID-19 syndrome was 43.2% (n =โ€‰159)"
frontiersin.org/journals/publiโ€ฆ
Image
2) A cross-sectional study was conducted involving 368 adults who had tested positive for COVID-19 between January-July 2022 in Qatar.
The prevalence of PCS was found to be 43.2%, with the most common persistent symptoms being fatigue (75.5%), anxiety (49.1%) ... Image
3) forgetfulness (46.5%) and mood alterations (45.3%).
PCS was more prevalent among females (67.9%) compared to males. The median age of PCS patients was 37 years. Most had a university education and were employed.
Read 4 tweets

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