Raj Rajnarayanan Profile picture
May 18, 2024 β€’ 7 tweets β€’ 3 min read β€’ Read on X
Tracking #SARSCoV2 #Lineages - Globally |05/18/24

Top lineages -#30DayTrends (#G30)

KP.2 (12.7%)
KP.3 (11.6%)πŸ‘€
JN.1.7 (6.9%)
JN.1 (6.8%)
JN.1.16 (5%)
JN.1.4 (4.9%)
JN.1.16.1 (4.6%)
KP.1.1 (3.6%)
KS.1 (2.8%)
JN.1.32 (2.7%)
LB.1 (2.7%)


1/npublic.tableau.com/app/profile/ra…
Granular details #Global #30DayTrends

KP* is the dominant group of lineages in the world.

This analysis includes #SARSCoV2 sequences submitted to @GISAID with sample collection dates on or after 04/18/2024 (6,469 sequences)

2/n Image
@GISAID Predicted Immune Escape vs ACE2 Binding Scores of circulating SARSCoV2 lineages (Relative to BA.2)



3/n public.tableau.com/app/profile/ra…
Image
@GISAID You can filter spike mutations S31del, R346T, L455S, F456L, T572I (Top convergent mutations) to display #SLip, #FLiRT, #TiRT, #FLiRTTI, #DeFLiRT combo mutations; (Note: retired #FLip as of now)

4/n Image
@GISAID Tracking JN.1* + #FLiRT lineages #30DayTrends

5/n Image
@GISAID Tracking KP.3 overtime globally #30DayTrends

6/n
Image
Image
@GISAID Tracking JN.1*+ Spike S31del globally - #30DayTrends

7/n
Image
Image

β€’ β€’ β€’

Missing some Tweet in this thread? You can try to force a refresh
γ€€

Keep Current with Raj Rajnarayanan

Raj Rajnarayanan Profile picture

Stay in touch and get notified when new unrolls are available from this author!

Read all threads

This Thread may be Removed Anytime!

PDF

Twitter may remove this content at anytime! Save it as PDF for later use!

Try unrolling a thread yourself!

how to unroll video
  1. Follow @ThreadReaderApp to mention us!

  2. From a Twitter thread mention us with a keyword "unroll"
@threadreaderapp unroll

Practice here first or read more on our help page!

More from @RajlabN

Jul 3
#COVID19 #VariantDashboard - #USA| 07/02/25

#SARSCoV2 #Lineages #30DAYTRENDS

XFG.2 (13.5%)
XFG (13.3%)
NB.1.8.1 (11.1%)
LP.8.1.1 (10.1%)
XFG.3 (7.7%)
PQ.2 (3.1%)
PY.1 (1.9%)
NY.13 (1.7%)
NW.1 (1.6%)
NY.15 (1.6%)

Tracker:

1/n tinyurl.com/mryj4uu7Image
Top #SARSCoV2 #Lineages #30DayTrends after removing #Airport #Surveillance Sequences

XFG.2 (19.8%)
LP.8.1.1 (13.3%)
NB.1.8.1 (7.4%)
XFG (6.1%)
XFG.3 (4.9%)

2/n Image
Status of #COVID19 in #NewYork (#Bellwether State)

XFG.2 is the top circulating #SARSCoV2 lineage in NY
others in top 5: XFG, LP.8.1.1, NB.1.8.1, XFG.3

#COVID19 hospitalizations - low | #WasteWater #SARSCoV2 -low | @HealthNYGov

3/n Image
Image
Image
Read 4 tweets
Jun 22
Tracking #SARSCoV2 #Lineages - Globally |06/21/25

Top lineages -#30DayTrends #G30

NB.1.8.1 (18.8%)
LP.8.1.1 (14.9%)
XFG (13.4%)
XFG.3 (6.2%)
PQ.2 (3.9%)
PY.1 (3.3%)
LF.7.1.3 (2.8%)
XFG.2 (2.3%)
PQ.1 (2.1%)
LP.8.1.6 (1.9%)

Tracker:

1/n public.tableau.com/app/profile/ra…Image
This analysis includes #SARSCoV2 sequences submitted to @GISAID with sample collection dates on or after 05/22/2025 (3,720 sequences)

Note: Tracker includes ~81K seqs w/ collection dates on or after 01/01/2025 (seqs with significant date errors are not included)

2/n Image
@GISAID Thanks to all the countries that are supporting #SARSCoV2 testing & rapidly submitting sequences to @GISAID

Top submitters #USA #Spain #Australia #UK #India #Canada #Singapore #NewZealand #Kazakhstan #France #China #PuertoRico #Malaysia #Luxembourg #Ireland #HongKong
3/n Image
Read 4 tweets
Jun 16
#COVID19 #VariantDashboard - #USA| 06/15/25

#SARSCoV2 #Lineages #30DAYTRENDS

LP.8.1.1 (22.1%)
NB.1.8.1 (13.6%)πŸ‘€
XFG.2 (12.9%)πŸ‘€
XFG (12%)πŸ‘€
LP.8.1 (3.4%)
LF.7.9.1 (2.5%)
XFJ (2.4%)
LF.7.7.2 (2.3%)
NY.3 (2.3%)
NW.1 (1.7%)

Tracker:

1/n tinyurl.com/mryj4uu7Image
Top #SARSCoV2 #Lineages #30DayTrends after removing #Airport #Surveillance Sequences

LP.8.1.1 (25.9%)
XFG.2 (18%)
NB.1.8.1 (6.9%)
XFG (6.1%)
LP.8.1 (4.7%)

2/n Image
Status of #COVID19 in #NewYork (#Bellwether State)

XFG.2 is the top circulating #SARSCoV2 lineage in NY
others in top 5: LP.8.1.1, XFG, LF.7.7.2, NB.1.8.1

#COVID19 hospitalizations - low | #WasteWater #SARSCoV2 -low | @HealthNYGov

3/n Image
Image
Image
Read 4 tweets
Jun 7
Tracking #SARSCoV2 #Lineages - Globally |06/07/25

Top lineages -#30DayTrends #G30

NB.1.8.1 (21.6%) πŸ‘€
LP.8.1.1 (14.5%)
XFG (10.4%)πŸ‘€
XEC.25.1 (3.1%)
XFG.2 (2.9%)πŸ‘οΈ
PC.2 (2.8%)
LF.7.9.1 (2.5%)
PQ.2 (2.4%)πŸ‘οΈ
XEC (2%)
PQ.1 (1.9%)

Tracker:

1/n public.tableau.com/app/profile/ra…Image
This analysis includes #SARSCoV2 sequences submitted to @GISAID with sample collection dates on or after 05/08/2025 (3,370 sequences)

Note: Tracker includes ~70K seqs w/ collection dates on or after 01/01/2025 (seqs with significant date errors are not included)

2/n Image
@GISAID Thanks to all the countries that are supporting #SARSCoV2 testing & rapidly submitting sequences to @GISAID

Top submitters #USA #Singapore #Spain #UK #Australia #Canada #Thailand #NewZealand #India #France #Ireland #Taiwan #HongKong #Pakistan #Bahrain #Cambodia #Japan

3/n Image
Read 6 tweets
May 25
Tracking #SARSCoV2 #Lineages - Globally |05/24/25

Top lineages -#30DayTrends #G30

LP.8.1.1 (17.1%)
NB.1.8.1 (12.6%)πŸ‘€
PC.2 (6.2%)
XFG (3.9%)πŸ‘€
XEC.25.1 (3%)
LP.8.1 (2.8%)
XEC (2.6%)
LP.8.1.6 (2.3%)
XFJ (2.3%)
XEC.4 (2.1%)

Tracker:

1/n public.tableau.com/app/profile/ra…Image
This analysis includes #SARSCoV2 sequences submitted to @GISAID with sample collection dates on or after 04/24/2025 (2,242 sequences)

Note: Tracker includes ~64K seqs w/ collection dates on or after 01/01/2025

2/n Image
@GISAID Thanks to all the countries that are supporting #SARSCoV2 testing & rapidly submitting sequences to
@GISAID

Top submitters #USA #Singapore #Canada #Spain #UK #Australia #NewZealand #Ireland #Japan #Israel #Denmark #Netherlands #SouthKorea #HongKong #Taiwan #China

3/n Image
Read 5 tweets
Apr 13
Tracking #SARSCoV2 #Lineages - Globally |04/12/25

Top lineages -#30DayTrends #G30

LP.8.1.1 (25%)
XEC (14.3%)
LP.8.1 (11.3%)
XEC.4 (6.1%)
LF.7 (4.5%)
MC.10.1 (3.9%)
LF.7.2.1 (3.5%)
XEC.2 (2.5%)
NB.1 (2.3%)
--
XFJ (~0.3%)

Global Tracker:

1/n public.tableau.com/app/profile/ra…Image
This analysis includes #SARSCoV2 sequences submitted to @GISAID with sample collection dates on or after 03/13/2025 (3,561 sequences)

2/n Image
@GISAID Thanks to all the countries that are supporting #SARSCoV2 testing & rapidly submitting sequences to
@GISAID

Top submitters #USA #Canada #Australia #Singapore #UK #Spain #France #Japan #NewZealand #Denmark #Croatia #SouthKorea #HongKong #Mexico #Norway #Brazil #Taiwan

3/n Image
Read 5 tweets

Did Thread Reader help you today?

Support us! We are indie developers!


This site is made by just two indie developers on a laptop doing marketing, support and development! Read more about the story.

Become a Premium Member ($3/month or $30/year) and get exclusive features!

Become Premium

Don't want to be a Premium member but still want to support us?

Make a small donation by buying us coffee ($5) or help with server cost ($10)

Donate via Paypal

Or Donate anonymously using crypto!

Ethereum

0xfe58350B80634f60Fa6Dc149a72b4DFbc17D341E copy

Bitcoin

3ATGMxNzCUFzxpMCHL5sWSt4DVtS8UqXpi copy

Thank you for your support!

Follow Us!

:(