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May 21 8 tweets 3 min read Read on X
𝗢𝗽𝘁𝗶𝗺𝗮𝗹 𝘁𝗶𝗺𝗶𝗻𝗴 𝗼𝗳 𝗯𝗼𝗼𝘀𝘁𝗲𝗿 𝗱𝗼𝘀𝗲𝘀 𝗶𝗻 𝗮 𝗵𝗶𝗴𝗵𝗹𝘆 𝘃𝗮𝗰𝗰𝗶𝗻𝗮𝘁𝗲𝗱 𝗽𝗼𝗽𝘂𝗹𝗮𝘁𝗶𝗼𝗻 𝘄𝗶𝘁𝗵 𝗺𝗶𝗻𝗶𝗺𝗮𝗹 𝗻𝗮𝘁𝘂𝗿𝗮𝗹 𝗲𝘅𝗽𝗼𝘀𝘂𝗿𝗲 𝘁𝗼 𝗖𝗢𝗩𝗜𝗗-19

medrxiv.org/content/10.110…
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2) This study presents an individual-based model to simulate SARS-CoV-2 transmission and clinical outcomes in a population over time. It incorporates vaccination roll-out, immune responses to infection/vaccination, and variant emergence/properties. Image
3) The model was applied to investigate impacts of waning vaccine immunity and Omicron emergence in Australia in early 2022, given high vaccine uptake but low prior infection.
For a Delta resurgence, accelerating booster eligibility from 6 to 3 months post-primary vaccination .. Image
4) ...strongly suppressed infections and clinical burdens.
While boosters could not control Omicron spread due to immune escape, earlier boosting still maximized protection against severe outcomes if Omicron retained Delta-level severity. Image
5) The model framework allows flexibility to change any component (e.g. add infection history) and address policy-relevant scenarios as immunity changes over time and variants emerge.
By capturing individual immunity dynamics, it can assess impacts of variants with .. Image
6) ...different transmissibility and severity profiles depending on population immune landscapes.
This study informed Australia's decision to accelerate its booster program in late 2021, demonstrating how such models can directly support ... Image
7) ...public health decision-making during outbreaks.
This study presents a novel individual-based model framework that integrates vaccination, immunity, transmission and outcomes to project COVID-19 impacts and evaluate mitigation strategies as population immunity changes.
8) Thanks for reading 🙏
FYI @DavidJoffe64 @C_A_G0101

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More from @ejustin46

May 23
𝗧𝗵𝗲 𝘃𝗶𝗿𝘂𝘀 𝗦𝗔𝗥𝗦-𝗖𝗢𝗩-2 𝗹𝗼𝘃𝗲𝘀 𝘁𝗼 𝘁𝗿𝗮𝘃𝗲𝗹 🌄

medrxiv.org/content/10.110…

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2) This study characterized SARS-CoV-2 transmission patterns between Rio Grande do Sul, Brazil and neighboring regions based on genomic surveillance data from June 2020 to July 2022. Over 1,400 genomes from across Rio Grande do Sul were sequenced... Image
3) ...representing major Gamma, Delta, and Omicron variants. Phylogenetic analysis identified distinct clades for each variant. For Gamma, Rio Grande do Sul lineages clustered most closely with Southeast Brazil states. Image
Read 6 tweets
May 23
𝗪𝗲𝘀𝘁 𝗔𝗳𝗿𝗶𝗰𝗮𝗻 𝗽𝗿𝗲-𝗽𝗮𝗻𝗱𝗲𝗺𝗶𝗰 𝗰𝗿𝗼𝘀𝘀-𝗿𝗲𝗮𝗰𝘁𝗶𝘃𝗲 𝗮𝗻𝘁𝗶𝗯𝗼𝗱𝘆 𝗮𝗻𝗱 𝗰𝗲𝗹𝗹𝘂𝗹𝗮𝗿 𝗿𝗲𝘀𝗽𝗼𝗻𝘀𝗲𝘀 𝗮𝗴𝗮𝗶𝗻𝘀𝘁 𝗦𝗔𝗥𝗦-𝗖𝗼𝗩-2

medrxiv.org/content/10.110…
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2) This study analyzed pre-pandemic samples from Senegal for cross-reactive immunity to SARS-CoV-2. 23.5% of samples from 2004-05 had antibodies to SARS-CoV-2 nucleoprotein only, suggesting previous human coronavirus (hCoV) infection. Image
3) Over 78% of these recognized hCoV-229E or -OC43 antigens, while 95.7% bound hCoV-HKU1. 82.2% and 84.4% of paired immune cells responded to SARS-CoV-2 spike and nucleoprotein stimulation. A unique individual seroconverted to SARS-CoV-2 spike and receptor binding domain 2003-04 Image
Read 4 tweets
May 22
𝘼𝙫𝙞𝙖𝙣 𝙢𝙤𝙧𝙩𝙖𝙡𝙞𝙩𝙮 𝙖𝙨𝙨𝙤𝙘𝙞𝙖𝙩𝙚𝙙 𝙬𝙞𝙩𝙝 𝙨𝙪𝙥𝙥𝙡𝙚𝙢𝙚𝙣𝙩𝙖𝙡 𝙛𝙚𝙚𝙙𝙞𝙣𝙜 𝙖𝙣𝙙 𝙜𝙧𝙤𝙪𝙣𝙙 𝙛𝙤𝙧𝙖𝙜𝙞𝙣𝙜 𝙗𝙚𝙝𝙖𝙫𝙞𝙤𝙧𝙨 !

With increasing urbanization comes habitat destruction and alteration, resulting in the loss ... Image
2) ...of natural nesting and foraging habitats for wildlife, including birds (Evans et al. 2009).
In fact, supplementary feeding can increase the risk of pathogen transmission or malnutrition (Galbraith et al. 2016).
tandfonline.com/doi/full/10.10…
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3) Ground foragers birds engaged in ground scratching/probing behaviors have higher potential for virus exposure through nasal/oral mucosa compared to aerial feeders.
Crowded ground feeding areas (e.g. around supplemental feeders) could increase contact rates between birds... Image
Read 10 tweets
May 22
𝗪𝗵𝗮𝘁 𝗮𝗿𝗲, 𝗥𝗡𝗔 𝗲𝗱𝗶𝘁𝗶𝗻𝗴 𝗮𝗻𝗱 𝗵𝗼𝘀𝘁 𝗹𝗻𝗰𝗥𝗡𝗔𝘀 ?

(𝘯𝘰𝘵 𝘳𝘦𝘢𝘭𝘭𝘺 𝘢 𝘭𝘢𝘺𝘮𝘢𝘯 𝘷𝘦𝘳𝘴𝘪𝘰𝘯, 𝘴𝘰𝘳𝘳𝘺 🤷‍♂️)
cell.com/iscience/fullt…
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2) RNA Editing :
It refers to the phenomenon where the viral RNA undergoes modifications or changes after it infects human cells.

It involves the insertion, deletion, or substitution of nucleotides in the RNA sequence, leading to changes in the corresponding protein sequence. Image
3) Host IncRNAS :
It refers to long non-coding RNA molecules that are produced by the host (human) in response to infection with the SARS-CoV-2 virus.

These IncRNAS play a role in the host's immune response and can potentially influence the course of infection. Image
Read 9 tweets
May 22
𝗔𝗻𝘁𝗶𝗯𝗼𝗱𝘆 𝗹𝗼𝗻𝗴𝗲𝘃𝗶𝘁𝘆 𝗮𝗻𝗱 𝘄𝗮𝗻𝗶𝗻𝗴 𝗳𝗼𝗹𝗹𝗼𝘄𝗶𝗻𝗴 𝗖𝗢𝗩𝗜𝗗-19 𝘃𝗮𝗰𝗰𝗶𝗻𝗮𝘁𝗶𝗼𝗻 𝗶𝗻 𝗮 1-𝘆𝗲𝗮𝗿 𝗹𝗼𝗻𝗴𝗶𝘁𝘂𝗱𝗶𝗻𝗮𝗹 𝗰𝗼𝗵𝗼𝗿𝘁

nature.com/articles/s4159…
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2) In this longitudinal study in Bangladesh of 452 adults researchers found that S-antibody levels after COVID vaccination declined by 50% at 4 months and continued dropping unless boosted. mRNA vaccines generated highest antibodies and 5 months protection ... Image
3) ...while AstraZeneca provided longest, up to 9 months. Prior infection between doses boosted antibodies and protection. Third dose or infection re-stimulated antibody increase. Lower antibodies preceded infections. Image
Read 4 tweets
May 22
𝙐𝙣𝙡𝙚𝙖𝙨𝙝𝙞𝙣𝙜 𝙩𝙝𝙚 𝙥𝙤𝙩𝙚𝙣𝙩𝙞𝙖𝙡 𝙤𝙛 𝙉𝘼𝙎𝘼𝙇 𝙎𝙋𝙍𝘼𝙔 𝙑𝘼𝘾𝘾𝙄𝙉𝙀𝙎 𝙖𝙜𝙖𝙞𝙣𝙨𝙩 𝘾𝙊𝙑𝙄𝘿-19

onlinelibrary.wiley.com/doi/10.1002/ct…
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2) The nasal cavity plays an important role in SARS-CoV-2 infection, as the virus first infects nasal epithelial cells upon exposure. Current intramuscular vaccines are limited in inducing mucosal immunity in the nasal cavity. This allows the virus to potentially spread down .. Image
3) ...the respiratory tract before antibodies are produced. This review discusses the structure and defensive barriers of the nasal cavity, as well as the invasion mechanisms utilized by SARS-CoV-2. Image
Read 5 tweets

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