We see very clearly on this graph the incredible acceleration of the substitution rate, with the swarm or cloud JN.1
2) As a reminder, the substitution rates (and not mutation as I had wrongly indicated in my previous post, thx to @AltenbergLee) were:
βΆοΈ 2020 : 23
βΆοΈ 2021 : 23.3
βΆοΈ 2022 : 29
βΆοΈ 2023 : 29.6
and since the beginning of 2024 : 31.3
3) Also, as very rightly indicated by @_ppmv, it is this level of divergence which is impressive.
4) The title of my post comes from the famous book by Gerard Piel. Sometimes people talk about this subject using the terms of "The Great Acceleration"
5) Pathogens and infectious diseases are not an exception and their diffusion is also accelerating as with socioeconomic indicators.
6) We only regret that with each new variant / major mutation (Flirt, KP.2, KP.3 or LB.1 and KP.2.3 as my friend Kei Sato @SystemsVirology has just indicatedπ) some people feel obliged to announce the emergence of a new wave.
7) In our opinion, there is a misunderstanding of the concept of "fertile mutation". For a new wave to emerge, it is not enough for in vitro studies to show its capacity of immune escape, it must also be able to encounter favorable terrain (immune landscape).
8) To conclude, during our previous post on this subject 6 months ago, @flodebarre sent us this remarkable study which we recommend.
IS SARS-CoV-2 BECOMING "INVISIBLE"? The Hidden Truth Behind the Pandemic
As the world strives to move past the COVID-19 pandemic, a troubling narrative has emerged: the perception that SARS-CoV-2 is becoming "invisible."
2) Governments and communities are eager to return to normalcy, leading to a tendency to downplay the virus's severity. Reports of new infections and long COVID cases have been totally minimized, creating a false sense of security ...
3) ...that the virus is no longer a significant threat. However, this perception is not only a matter of public sentiment. The virus itself has evolved, most notably with the emergence of the Omicron variant. Recent research reveals that Omicron exhibits a remarkable ability ...
2) This research shows that SARS-CoV-2, the virus that causes COVID-19, stops infected cells from dying. Normally, when cells die, it helps stop viruses from spreading. By keeping these cells alive longer, SARS-CoV-2 allows itself to multiply and also helps other viruses ...
3) ... like influenza A, grow more easily.
When someone has both SARS-CoV-2 and influenza A, the two viruses can make a person much sicker. The immune system gets overwhelmed, leading to more inflammation and damage to the lungs.
ENTROPY UNLEASHED:
How Viral Protein Interactions Drive Coronavirus Adaptation in Bats and Humans
Entropy, in a general sense, refers to the level of disorder or randomness in a system. biorxiv.org/content/10.110β¦
2) When we talk about protein interactions and viral behavior, entropy can be viewed as a measure of how complex and varied these interactions are.
In the context of the study about coronavirus interactions in bat and human cells, here's a simplified breakdown.
3) **Complex Interactions**: The study identifies how proteins from the coronavirus interact with host cells (both bats and humans). These interactions can be highly ordered (low entropy) or more chaotic (high entropy).
Patients care most about how COVID-19 affects their health and daily life, including for those with long COVID. Scientists focus on understanding the virus to find better treatments. Both views are important for dealing with the pandemic.
2) I'm bringing up this topic because, after talking so much about the disease, its long-term effects, treatments, and vaccines, many people have forgotten that we are dealing with the most dangerous virus humanity has ever faced.
Organelles provide the possibility for the virus to organize its RNA in PROTECTED structures, concentrate REPLICATION machinery ... nature.com/articles/s4146β¦
2) ...compartmentalize the replication process, and hide from immune detection.
Figure 1g - The large perinuclear clusters of viral RNA demonstrate how the viral RNA is organized into PROTECTED structures.
2) Figure 3d- The nanoscale puncta of the viral RNA-dependent RNA polymerase (nsp12) within and around the viral RNA clusters show the concentration of REPLICATION machinery.