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Jun 6 โ€ข 17 tweets โ€ข 6 min read โ€ข Read on X
๐™Ž๐˜ผ๐™๐™Ž-๐˜พ๐™Š๐™‘-2 :
๐™๐™๐™š ๐™œ๐™ง๐™š๐™–๐™ฉ ๐˜พ๐™Š๐™‰๐™๐™๐™Ž๐™„๐™Š๐™‰ ๐™—๐™š๐™ฉ๐™ฌ๐™š๐™š๐™ฃ ๐™Ž๐™€๐˜ผ๐™Ž๐™Š๐™‰๐˜ผ๐™‡, ๐˜พ๐™”๐˜พ๐™‡๐™„๐˜พ ๐™–๐™ฃ๐™™ ๐™ˆ๐™€๐™๐™€๐™Š๐™๐™Š๐™‡๐™Š๐™‚๐™„๐˜พ๐˜ผ๐™‡ ๐™›๐™–๐™˜๐™ฉ๐™ค๐™ง๐™จ
(๐˜ฎ๐˜ฆ๐˜จ๐˜ข-๐˜ต๐˜ฉ๐˜ณ๐˜ฆ๐˜ข๐˜ฅ - 1๐˜ด๐˜ต ๐˜ฑ๐˜ข๐˜ณ๐˜ต)
2) SEASONAL DISEASES refer to illnesses or health conditions (flu, common cold, allergies...) that are more prevalent during SPECIFIC seasons of the year (usually winter or spring).
These diseases are influenced by environmental factors and the presence of seasonal pathogens. Image
4) COVID-19 is a PANDEMIC and CYCLIC disease.
Pandemic, as it has spread globally and continues to affect populations worldwide.
Cyclic, because it appeared on average every 3/4 months which could give the false impression that it followed the seasons. Image
5) Like any rule there are exceptions, with cycles which have not taken place in some countries, with generally a more intense cycle afterwards.

Contrary to what some say, they are not linked exclusively ... Image
6) ... to the emergence of new variants, as we have shown for the US ๐Ÿ‘‡
There is a combination of factors, new variants, waning immunity / increase in nb of susceptible people, population movements and changes in modes of transmission (vacations, school breaks, etc.) ... Image
7) What is the contribution of meteorological factors (temperature, humidity) to these cycles?

In less than a month, there have been 3 fascinating studies on this subject which we will develop in a 2nd part, far from clichรฉs or abusive simplifications ๐Ÿ˜Š
8) METEOROLOGICAL FACTORS
(2๐˜ฏ๐˜ฅ ๐˜ฑ๐˜ข๐˜ณ๐˜ต)

1st study :
"A mixture of mobility and meteorological data provides a high correlation with COVID-19 growth in an infection-naive population: a study for Spanish provinces"
frontiersin.org/journals/publiโ€ฆ
Image
9) Analysis of Spanish COVID-19 data reveals high correlations between growth rate and principal components of mobility and meteorological data, with mobility playing a larger role. Correlations are maximal at 2-3 week time lags, consistent with delays between infection ... Image
10) ... symptom onset, and case reporting. Combining mobility and meteorological data improves explanatory power compared to either alone.

2nd study :
COVID-19 dynamics in Hiroshima, Japan, and its association with meteorological factors over 3.5 years.
cureus.com/articles/24332โ€ฆ
Image
11) Wind speed showed the strongest correlation with COVID-19 metrics. SARS-CoV-2 variant distributions, with Alpha, Delta, and Omicron predominant, were also linked to meteorological factors. Image
12) The findings highlight the role of environmental factors in shaping pandemic outcomes and underscore the need for integrated surveillance approaches to mitigate future outbreaks. Image
13) Spearman's correlation coefficient. Image
14) Maybe the most interesting one to end :
"Non-linear effects of meteorological factors on COVID-19: An analysis of 440 counties in the americas"
cell.com/heliyon/fullteโ€ฆ
Image
15) This study analyzed the non-linear effects of meteorological factors (temperature, humidity, solar radiation, surface pressure, precipitation, wind speed) on COVID-19 transmission across 440 counties in the Americas from 2020-2021. The results showed ... Image
16) - Temperature had a positive correlation below 5ยฐC and above 23ยฐC, and a negative correlation between 5-23ยฐC.
- Relative humidity and solar radiation exhibited significant negative correlations, with a rapid decrease in daily new cases above 74% humidity and ... Image
17) ...750 kJ/m2 solar radiation.
โ€ข Surface pressure showed an inverse relationship at 0-10 and 15-21 day lags.
โ€ข Precipitation had no significant associationใ€‚
โ€ข Wind speed had a slightly higher infection risk under low (0-2 m/s) and high (10 day lag) conditions. Image
18) The study provides important insights into the complex, non-linear relationships between meteorological factors and COVID-19 transmission, highlighting the need for regional and latitudinal considerations in understanding pandemic dynamics.

Thanks and nice weather to you ๐Ÿ˜Š Image

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More from @ejustin46

Dec 11
POLYGENIC DETERMINANTS OF H5N1 ADAPTATION TO BOVINE CELLS

H5N1 avian influenza virus (lineage 2.3.4.4b, B3.13 genotype) has unexpectedly caused a large outbreak in dairy cattle in North America.

biorxiv.org/content/10.110โ€ฆImage
2) The study focused on understanding how the internal genomic segments of this virus have adapted to bovine cells. The researchers generated 45 reassortant viruses and found that multiple segments of the B3.13 viruses contribute to their faster replicative fitness ... Image
3) ...in bovine cells, compared to other influenza A viruses. Additionally, the B3.13 recombinants were less susceptible to the bovine interferon response, but still restricted by the human MX1 protein. Image
Read 4 tweets
Dec 11
The SARS-COV-2 "HIJACKOME"
explained in a few figures
(Part 1)

The "hijackome" refers to the set of host cell components and processes that the SARS-CoV-2 virus exploits or "hijacks" to enable its own replication and spread within the infected cells. Image
2) The figure 1c shows the levels of key SARS-CoV-2 viral proteins (e.g. nucleocapsid, spike) over the course of infection in the host cells. The Omicron BA.1 and BA.5 variants had slower initial increases in viral protein levels compared to other variants, but ... Image
3)...reached similar high levels by the later 36-hour timepoint.

Potential explanation for slower early kinetics: The study suggests this slower early infection progression for Omicron BA.1 and BA.5 may be due to differences in their replication and entry mechanisms compared ...
Read 4 tweets
Dec 5
GENETIC FACTORS play a MAJOR ROLE in how the IMMUNE SYSTEM RESPONDS to COVID-19.
biorxiv.org/content/10.110โ€ฆImage
2) The researchers found thousands of genetic variants that influence gene expression in immune cells, and many of these were specific to COVID-19 patients. They also discovered that the effects of these genetic variants depend on the functional state of the immune cells. Image
3) Importantly, the genetic risk factors for severe COVID-19 were linked to these patient-specific genetic effects on gene expression. Overall, the results highlight how an individual's genetics can significantly shape their immune response and ... Image
Read 5 tweets
Dec 2
How LONG can H5N1 REMAIN STABLE in RAW MILK?
Why does the widespread DETECTION of H5N1 in WASTEWATER NOT LEAD to a HIGH NUMBER of HUMAN CASES?

biorxiv.org/content/10.110โ€ฆImage
2) The study found that H5N1 is remarkably stable in raw milk, with a half-life of 2.1 days at 4ยฐC. This means infectious virus could persist for over a month in refrigerated raw milk from infected cows. Even at room temperature (22ยฐC), the half-life was 0.74 days ... Image
3) ...retaining infectivity for up to 3 weeks. The high protein content of milk appears to stabilize the virus.

In contrast, H5N1 had a much shorter half-life of only 0.48 days (12 hours) at 22ยฐC in wastewater. The rapid inactivation of the virus in wastewater likely ...
Read 4 tweets
Dec 1
UNDERSTANDING the EMERGENCE and SPREAD of NEW VARIANTS

Example of Dispersal history of SARS-CoV-2 variants Alpha, Delta, and Omicron (BA.1) in Spain
pmc.ncbi.nlm.nih.gov/articles/PMC11โ€ฆImage
2) The dominant factors that contributed to the emergence and spread of new SARS-CoV-2 variants in Spain appear to be:

โ–ถ๏ธ Relaxation of control measures: The study links the increased introductions and spread of Delta and Omicron-BA.1 to the "lifting of certain control measures" Image
3)..and "easing of travel restrictions," suggesting relaxed public health interventions were key.

โ–ถ๏ธ Seasonal factors and human mobility: The Delta wave coincided with the "summer period, when Spain receives a considerable number of tourists," indicating seasonal changes and... Image
Read 6 tweets
Nov 27
The DANGER THEORY of IMMUNITY revisited
(A fascinating study ๐Ÿ’ฏ๐Ÿ‘)

This theory proposed by Polly Matzinger in 1994, suggests that the immune system responds primarily to signs of tissue stress or damage rather than just recognizing foreign invaders.
nature.com/articles/s4157โ€ฆImage
2) This means that for the immune system to react effectively, it needs two things: the ability to recognize harmful substances (antigenicity) and signals that indicate tissue damage (adjuvanticity). Image
3) Research shows that cancer cells and viruses can trick the immune system by hiding these damage signals. Additionally, imbalances in gut bacteria can weaken the immune system's response to infections. Image
Read 5 tweets

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