Dan O'Hara Profile picture
Sep 12, 2024 • 9 tweets • 4 min read • Read on X
This week's UKHSA data is out, and so our Covid PCR Positivity map has automatically updated with the fresh data.

We've also added a couple of features; I'll explain how they work.

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When you click on an area now, you're shown a trendline for over the last 7 days, so that you can determine if prevalence is rising or falling locally.

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Clicking on the name of the local authority will take you straight to the UKHSA dashboard testing page, where you can see if testing is being done consistently.

The number of people tested over the last 7 days is always incomplete, & is adjusted upwards the following week.

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Clicking on the date will take you to the API result, so you can verify for yourself that what the map shows you is accurate.

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In some areas, the county council is split into lower-tier borough or district councils, such as here: Worthing Borough Council, in West Sussex County Council.

The % and trendline shown is for West Sussex as a whole.

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If you click on the name, Worthing, you're taken straight to the UKHSA dashboard page for that lower-tier area.

As you can see, that area has not reported results for a month. So on the map, we're sticking with the more reliable % for the whole county.

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We've had a few questions about what we can really learn from PCR positivity.

I've posted a lot over the last 18 months about how well PCR positivity tracks prevalence and the shape of waves, even after testing was massively cut back.

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But I'd also like to draw people's attention to Adam Kucharski's new paper, in which he demonstrates that PCR prevalence in a small community - Premier League footballers - tracked national prevalence as measured by the ONS remarkably precisely.



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(and for those who don't have the link to the map, posted last week: )jamestindall.info/skeuomorpholog…

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More from @skeuomorphology

Sep 8
I know I don't often post except for Thursday's map updates, but there's something I need to discuss with you about the national PCR positivity rate.

That's the rate shown here.

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At the height of the October wave last year, every single area in England bar one was reporting test results regularly.

The map had no shaded areas. Image
Things have changed greatly since then.

In late January, a number of trusts decided to cut their testing dramatically.

In February, some trusts stopped reporting results completely.
Read 18 tweets
Sep 4
The PCR positivity map is out, and while things may have calmed a little in Cumbria, and in Devon, everywhere else looks to be rising.



1/7 jamestindall.info/skeuomorpholog…Image
National positivity started climbing again 10 days ago and was 9.25% as of last Friday.

Unfortunately that rise was before schools went back, so we're yet to see the usual start-of-term boost.

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We now have data for the areas on Teesside and Tyneside that were missing last week, and it looks grim.

Hartlepool's the outlier; everywhere else on ~20%, Durham already above that at 23.4%, N Yorkshire racing to join in.

All of them still rising.

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Read 7 tweets
Aug 28
The PCR positivity map is out, with national positivity holding at 9%.

I'm a bit dubious about that 9%, because most of the areas dropping out of reporting this week are ones that were heading for very high rates.

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Last week Thurrock & Medway were headed for 20%+; this week they're reporting 0%.

But Havering & Bexley, testing solidly are now on 20%+, so I suspect the drop-outs are too.

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A similar issue in the west.

Cornwall, Devon, Somerset, Wiltshire, Herefordshire, Gloucestershire are climbing again; but Bath is not reporting.

The highest is Shropshire, again with reliable testing, on very high levels.

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Read 7 tweets
Aug 7
The PCR positivity map is out.

National positivity has rebounded very suddenly to the highest level it's been all year.

It looks like most areas are seeing the yoyo effect this week.



1/7 jamestindall.info/skeuomorpholog…Image
The upturn has been particularly sudden and sharp, from 5.9 to 7.26% over the last week.

We haven't seen sudden & rapid growth like this since the autumn wave last year.

12% of areas aren't reporting, so 7.26% is an underestimate.

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Cornwall, Devon, Somerset, Dorset, Bath are all climbing rapidly.

The outlier is Plymouth at 28.99%, on a reliable level of testing.

Further east along the south coast there's a lot of non-reporting, but Portsmouth & W Sussex are on 12/13%.

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Read 7 tweets
May 8
The PCR positivity map is out, and weekly surveillance is reporting quite a large increase from 5.3 to 6%.

There's a higher level across all areas, but some are worth pointing out.



1/7 jamestindall.info/skeuomorpholog…Image
In the north, Teeside, Tyneside, and Cumbria all look quite alarming.

Gateshead is trying to get through it by testing very little, hence is the outlier. But Sunderland's testing is good - I'd take their rate as a guideline.

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It's a similar situation across Lancashire and W Yorkshire.

Salford's testing levels are solid, and I'd take their positivity level as a guideline for all the areas not reporting, as well as the ones doing v little testing.

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Read 7 tweets
Apr 24
The PCR positivity map is out, and this week national positivity has risen to 5.2%.

With a sharply increased number of areas not reporting this week, and with very visible outbreaks elsewhere, the average is likely to have been skewed downwards.



1/9 jamestindall.info/skeuomorpholog…Image
We're now seeing the cluster that was in Oxfordshire spread very widely and in all compass directions.

Oxon has dramatically reduced testing, but that can't hide the levels shown by normal levels of testing in surrounding counties. Gloucs. is a good example.

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A lot of you will find your area is like Milton Keynes (not reporting) or West Northants next door (no results for the last few days).

In this case you're reliant on looking at neighbours with reliable testing levels, like Central Beds.

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Read 9 tweets

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