Dan O'Hara Profile picture
Sep 12, 2024 • 9 tweets • 4 min read • Read on X
This week's UKHSA data is out, and so our Covid PCR Positivity map has automatically updated with the fresh data.

We've also added a couple of features; I'll explain how they work.

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When you click on an area now, you're shown a trendline for over the last 7 days, so that you can determine if prevalence is rising or falling locally.

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Clicking on the name of the local authority will take you straight to the UKHSA dashboard testing page, where you can see if testing is being done consistently.

The number of people tested over the last 7 days is always incomplete, & is adjusted upwards the following week.

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Clicking on the date will take you to the API result, so you can verify for yourself that what the map shows you is accurate.

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In some areas, the county council is split into lower-tier borough or district councils, such as here: Worthing Borough Council, in West Sussex County Council.

The % and trendline shown is for West Sussex as a whole.

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If you click on the name, Worthing, you're taken straight to the UKHSA dashboard page for that lower-tier area.

As you can see, that area has not reported results for a month. So on the map, we're sticking with the more reliable % for the whole county.

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We've had a few questions about what we can really learn from PCR positivity.

I've posted a lot over the last 18 months about how well PCR positivity tracks prevalence and the shape of waves, even after testing was massively cut back.

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But I'd also like to draw people's attention to Adam Kucharski's new paper, in which he demonstrates that PCR prevalence in a small community - Premier League footballers - tracked national prevalence as measured by the ONS remarkably precisely.



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(and for those who don't have the link to the map, posted last week: )jamestindall.info/skeuomorpholog…

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More from @skeuomorphology

May 8
The PCR positivity map is out, and weekly surveillance is reporting quite a large increase from 5.3 to 6%.

There's a higher level across all areas, but some are worth pointing out.



1/7 jamestindall.info/skeuomorpholog…Image
In the north, Teeside, Tyneside, and Cumbria all look quite alarming.

Gateshead is trying to get through it by testing very little, hence is the outlier. But Sunderland's testing is good - I'd take their rate as a guideline.

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It's a similar situation across Lancashire and W Yorkshire.

Salford's testing levels are solid, and I'd take their positivity level as a guideline for all the areas not reporting, as well as the ones doing v little testing.

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Read 7 tweets
Apr 24
The PCR positivity map is out, and this week national positivity has risen to 5.2%.

With a sharply increased number of areas not reporting this week, and with very visible outbreaks elsewhere, the average is likely to have been skewed downwards.



1/9 jamestindall.info/skeuomorpholog…Image
We're now seeing the cluster that was in Oxfordshire spread very widely and in all compass directions.

Oxon has dramatically reduced testing, but that can't hide the levels shown by normal levels of testing in surrounding counties. Gloucs. is a good example.

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A lot of you will find your area is like Milton Keynes (not reporting) or West Northants next door (no results for the last few days).

In this case you're reliant on looking at neighbours with reliable testing levels, like Central Beds.

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Read 9 tweets
Apr 17
The PCR positivity map is out.

Last week national positivity was up from 4.2 to 4.6%.

This week it's risen to 5%.

Where are the rises?



1/12 jamestindall.info/skeuomorpholog…Image
(By the way, I'm aware that UKHSA say it's at 4.9%.

The rolling average is 4.987%.

Let's just say I now have my concerns about their maths, as well as their basic grasp of English: words like 'baseline' and 'stable'.)

2/12
Anyway.

What we see this week is a general rising tide, with clear hotspots and not-reporting-spots.

We can tell a lot from looking at the not-reporting-spots in relation to hotspots, because they're usually right next door to each other.

3/12
Read 12 tweets
Apr 10
The PCR positivity map is out, reflecting a rise in national positivity from 4.2% to 4.6%.

If we compare last week's map with this week, we see that the rise isn't concentrated in one area.

Rather, the rise is more evenly spread across the country.



1/7 jamestindall.info/skeuomorpholog…Image
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The peak outlier is Medway, but when we check the data it seems they've just decided to start reporting again, based on few tests, after nearly 3 months.

Kent is higher than the average, and you can see (of the London areas that are reporting) Lambeth and Lewisham on 12%.

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While Oxford seems to be getting on top of its recent high rates, it's spread to everywhere surrounding.

Lots of those areas are now not reporting, but we can see rising positivity in Gloucs, Worcs, Bucks, and particularly W Berks.

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Read 7 tweets
Apr 3
The PCR map is out and national positivity has risen again to 4.2%.

The number of patients in hospital with covid, which was under 1,000 for most of February, has gone above 1,200 this week.



1/9 jamestindall.info/skeuomorpholog…Image
A good amount of the rise has been in the North-East and Yorkshire.

Beds in Durham and Darlington have risen rapidly, as in Harrogate; York has remained at its elevated level.

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There's a clear problem across this area around Leeds:

Doncaster's beds have rocketed out of nowhere

Wakefield and Rochdale report high positivity

Blackburn, Calderdale, Kirklees, Trafford, N Lincs. all dropped out of reporting.

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Read 9 tweets
Mar 13
The PCR positivity map is out for this week.

Given a plateau at 3.3% national positivity for the last week, I expected the map to correspond exactly to trusts having problems.

I wasn't prepared for just how accurate it is.



1/13 jamestindall.info/skeuomorpholog…Image
First the good news.

Gloucestershire, Worcestershire, Birmingham have all calmed down, with admissions dropping in all areas.

(Every week I cross-check the map data with the current hospital stats before I post.)

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It looks like levels are dropping in Southampton and Hampshire too.

University Hospital Southampton are starting to get a grip after a torrid 2 months, with patients down to mid-January levels.

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Read 14 tweets

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