Dan O'Hara Profile picture
Sep 12, 2024 • 9 tweets • 4 min read • Read on X
This week's UKHSA data is out, and so our Covid PCR Positivity map has automatically updated with the fresh data.

We've also added a couple of features; I'll explain how they work.

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When you click on an area now, you're shown a trendline for over the last 7 days, so that you can determine if prevalence is rising or falling locally.

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Clicking on the name of the local authority will take you straight to the UKHSA dashboard testing page, where you can see if testing is being done consistently.

The number of people tested over the last 7 days is always incomplete, & is adjusted upwards the following week.

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Clicking on the date will take you to the API result, so you can verify for yourself that what the map shows you is accurate.

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In some areas, the county council is split into lower-tier borough or district councils, such as here: Worthing Borough Council, in West Sussex County Council.

The % and trendline shown is for West Sussex as a whole.

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If you click on the name, Worthing, you're taken straight to the UKHSA dashboard page for that lower-tier area.

As you can see, that area has not reported results for a month. So on the map, we're sticking with the more reliable % for the whole county.

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We've had a few questions about what we can really learn from PCR positivity.

I've posted a lot over the last 18 months about how well PCR positivity tracks prevalence and the shape of waves, even after testing was massively cut back.

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But I'd also like to draw people's attention to Adam Kucharski's new paper, in which he demonstrates that PCR prevalence in a small community - Premier League footballers - tracked national prevalence as measured by the ONS remarkably precisely.



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(and for those who don't have the link to the map, posted last week: )jamestindall.info/skeuomorpholog…

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More from @skeuomorphology

Oct 9
The PCR positivity map is out, and UKHSA have finally deigned to describe covid activity as "medium".

UKHSA national positivity is 13.23%.

Adjusted for non-reporting we make it 15.27%.



1/ jamestindall.info/skeuomorpholog…Image
Hospital stats have been updated to the end of September - so, ten days ago.

As with positivity, there are many hospitals that aren't reporting.

One indicative figure is hospital staff off sick with covid: 3-400 most of the year, but climbed to nearly 700 over September.

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In what follows, I'm using the hospital stats as well as the map.

Where's getting hit the hardest?

In the south, Devon has seen a rebound, with patients tripling over the last 2 weeks of September. Other areas are steadier.

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Read 9 tweets
Oct 2
The PCR positivity map is out, and it's evident that everywhere is seeing a significant surge.

UKHSA positivity has risen to 11.83%.

Adjusted for non-reporting areas, we make that 13.77%.



1/8 jamestindall.info/skeuomorpholog…Image
Most areas that weren't reporting in the south have started again, except Kent and E Sussex.

Even Southampton (who issued an avoid A&E notice on Tuesday) have reported.

In fact, this week they've reported all their data going back to March - it confirms what I suspected.

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We're starting to see areas in the Midlands increase the amount of testing they're doing again.

Herefordshire, Worcestershire (and Rutland on few but not meaninglessly few tests) look the worst hit; Dudley and Northampton not far behind.

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Read 8 tweets
Sep 18
The PCR positivity map is out, and you'll see we've added a new feature this week.

A National Average (adjusted) is displayed at the top of the map, below the banner.

What is it?

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This national average is our attempt to compensate for the number of areas that are not reporting.

UKHSA's published average is calculated counting all the 0% areas as genuine 0s, which means their national average is skewed downwards.

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We've moved over the last 12 months from every area reporting to around 20% failing to report (though it does vary each week).

At the height of the October wave last year, shown here, every area was reporting & the national stat was reliable.

Now it's not.

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Read 14 tweets
Sep 8
I know I don't often post except for Thursday's map updates, but there's something I need to discuss with you about the national PCR positivity rate.

That's the rate shown here.

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At the height of the October wave last year, every single area in England bar one was reporting test results regularly.

The map had no shaded areas. Image
Things have changed greatly since then.

In late January, a number of trusts decided to cut their testing dramatically.

In February, some trusts stopped reporting results completely.
Read 18 tweets
Sep 4
The PCR positivity map is out, and while things may have calmed a little in Cumbria, and in Devon, everywhere else looks to be rising.



1/7 jamestindall.info/skeuomorpholog…Image
National positivity started climbing again 10 days ago and was 9.25% as of last Friday.

Unfortunately that rise was before schools went back, so we're yet to see the usual start-of-term boost.

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We now have data for the areas on Teesside and Tyneside that were missing last week, and it looks grim.

Hartlepool's the outlier; everywhere else on ~20%, Durham already above that at 23.4%, N Yorkshire racing to join in.

All of them still rising.

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Read 7 tweets
Aug 28
The PCR positivity map is out, with national positivity holding at 9%.

I'm a bit dubious about that 9%, because most of the areas dropping out of reporting this week are ones that were heading for very high rates.

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Last week Thurrock & Medway were headed for 20%+; this week they're reporting 0%.

But Havering & Bexley, testing solidly are now on 20%+, so I suspect the drop-outs are too.

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A similar issue in the west.

Cornwall, Devon, Somerset, Wiltshire, Herefordshire, Gloucestershire are climbing again; but Bath is not reporting.

The highest is Shropshire, again with reliable testing, on very high levels.

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Read 7 tweets

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