Dan O'Hara Profile picture
Sep 12 9 tweets 4 min read Read on X
This week's UKHSA data is out, and so our Covid PCR Positivity map has automatically updated with the fresh data.

We've also added a couple of features; I'll explain how they work.

🧵 >>>

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When you click on an area now, you're shown a trendline for over the last 7 days, so that you can determine if prevalence is rising or falling locally.

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Clicking on the name of the local authority will take you straight to the UKHSA dashboard testing page, where you can see if testing is being done consistently.

The number of people tested over the last 7 days is always incomplete, & is adjusted upwards the following week.

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Clicking on the date will take you to the API result, so you can verify for yourself that what the map shows you is accurate.

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In some areas, the county council is split into lower-tier borough or district councils, such as here: Worthing Borough Council, in West Sussex County Council.

The % and trendline shown is for West Sussex as a whole.

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If you click on the name, Worthing, you're taken straight to the UKHSA dashboard page for that lower-tier area.

As you can see, that area has not reported results for a month. So on the map, we're sticking with the more reliable % for the whole county.

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We've had a few questions about what we can really learn from PCR positivity.

I've posted a lot over the last 18 months about how well PCR positivity tracks prevalence and the shape of waves, even after testing was massively cut back.

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But I'd also like to draw people's attention to Adam Kucharski's new paper, in which he demonstrates that PCR prevalence in a small community - Premier League footballers - tracked national prevalence as measured by the ONS remarkably precisely.



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(and for those who don't have the link to the map, posted last week: )jamestindall.info/skeuomorpholog…

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More from @skeuomorphology

Sep 6
I've been working with @atomless on a new public tool to help people in England work out what's going on in their local area covid-wise.

It's an interactive map of PCR positivity. 🧵>>>

1/11

jamestindall.info/skeuomorpholog…
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@atomless You might remember the old UKHSA dashboard had maps of case rates, useful for estimating local risk.

Those maps were one of the tools to help us "live with covid". Alas they're gone, and owing to lack of testing, case rates are next to useless.

2/11 Image
@atomless So we've built a new map using the one piece of local data that remains a useful indicator of prevalence. We hope it will help people, particularly those at greater risk, to remain safe.

As this data is only available at local authority level, the map shows LA boundaries.

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Read 11 tweets
Aug 23
A few points about the data underpinning the research this article is about.

A🧵

1/10

theguardian.com/society/articl…
I use this data routinely for all sorts of purposes, not just LC. It's a huge survey that's run every year, about 5 times the size of the ONS/UKHSA infection survey, but with much more range and granular detail, and the data goes back to 2007.

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The results are weighted, just as ONS & UKHSA weight their results, so that they're representative of the whole English population of adults registered with a GP (which is just about everyone). So it's not just a survey of people who are ill.

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Read 10 tweets
Aug 20
It's become very difficult for the clinically vulnerable to judge when might be a safe - or at least safer - time to access healthcare.

That's partly because the tools have been taken away from them. The data is poor and now often comes too late.

A short 🧵

1/6
Case data and admissions data are indicative but both are now misleading given the lack of testing.

Look at cases on the UKHSA dashboard, and you'd have no idea that we're still in a much bigger wave than last Christmas.

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PCR positivity is a much more reliable indicator. For the public, it's just about the only trustable *and* actionable metric on the dashboard.

You can find it here:

3/6 ukhsa-dashboard.data.gov.uk/topics/covid-1…
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Read 6 tweets
Aug 18
I've been trying to make sense of the reasoning of the JCVI in its decisions about the Autumn 2024 covid vaccination offer.

(JCVI's the UK authority who recommend who to offer vaccinations to).

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This year, the vaccine is restricted to over-65s, residents in care homes, and very narrow high risk groups.

JCVI recommended against it being offered to frontline healthcare workers, carers, family of the immunocompromised, and every else under 65.

2/21 Image
I've been going through the minutes of the meeting when their decision was made, on 27 February 2024.

In what follows, I'm mainly highlighting the data upon which the JCVI base their reasoning and not the reasoning itself.

3/21
Read 22 tweets
Jun 30
It is depressing to see so much misinformation crammed into one article, @BBCNews, @AureliaAllen.

I barely know where to begin, so full is it of mathematical impossibilities, self-contradictions, and inaccuracies.

1/9

bbc.co.uk/news/articles/…
@BBCNews @AureliaAllen 1 in every 25000 would be a total of 2704 people with covid in the whole of the UK.

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@BBCNews @AureliaAllen That figure would have to mean that more people are currently hospitalized with covid than the total number of people with covid in the country.

3/9

Read 9 tweets
Nov 30, 2023
There's something a bit off about this norovirus story doing the rounds today. /1 Image
There's no question that there's been a sharp rise in the number of adult beds occupied with diarrhoea & vomiting symptoms over the last week. /2 Image
But the headline warning is this: that "The number of patients in hospital with norovirus last week was almost triple the number during the same period last winter".

/3england.nhs.uk/2023/11/hundre…
Read 6 tweets

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