Mushtaq Bilal, PhD Profile picture
Oct 24, 2024 20 tweets 7 min read Read on X
Zotero's new Note Editor can supercharge your note-taking and writing processes.

But many academics don't know about it.

Here's how to take notes with Zotero's Note Editor:
1. Open your Zotero desktop app and select a relevant collection.

Drag and drop the paper you want to read and take notes on.

Open the paper by double-clicking on it.
If you are new to Zotero, here are four ways you can add papers to your library:
2. Zotero will open the paper in a new window.

To your left, you will see an annotations panel, and to your right, the paper's metadata.

On the top of the paper, you will see annotation options.

In the right bar, you will see a small button for Zotero's Note Editor. A screenshot of Zotero's Note Editor.
3. While reading, you can highlight and underline important passages.

Select a passage and Zotero will give you highlight and underline options.

You can also color-code your annotations.

The highlighted/underlined passages will appear in the annotations panel.
4. You can add comments to the paper too.

Click on the paper-like icon on the top and place your cursor where you want to add a comment.

Then type in your comment in the annotations panel.
5. You can also add text in your PDF.

Click on the "T" on the top of the paper and place the cursor where you want to add text.

Type in the text and it will appear in the annotations panel.
6. If you are working with a scanned document that doesn't allow highlighting/underlining, you can use the "Select Area" option.

Click on the square on the top and select the area you want to highlight. It will be added to your annotations panel.
7. You can select text with a free drawing tool.

Select the pen-like icon on the top and mark the relevant text.

It will be added to the annotations panel.
Want to supercharge your academic writing with AI?

I have a complete tutorial for you.

5,000+ academics including those at Harvard, Stanford, and Columbia are using it.

You can get it here:
mushtaqbilalphd.thrivecart.com/ai
8. To open Zotero's Note Editor, click on the "Notes" button in the right bar.

You will see two options in the right panel: Item Notes and All Notes.

Item Notes are notes you take on a given paper and All Notes are all your notes in your Zotero library.
9. Click on the "+" in front of Item Notes and you will see two options: Add Item Note and Add Item Note from Annotations.

If you select the second option, Zotero will convert all your annotations into an editable note.
10. If you click on Add Item Note, Zotero will open a notepad for you with six options:

1. Formate Text
2. Text Color
3. Highlight Text
4. Clear Formatting
5. Insert Link
6. Insert Citation
11. Now you can start taking notes on the paper you are reading.
12. To add a citation, place the cursor where you want to insert one.

Then click on the "Insert Citation" button.

Zotero will open a red search bar with the name of the author whose paper is currently open.

Edit the citation if needed and press Enter and it will be added.
13. To add a hyperlink, select the relevant text and click on "Insert Link."

Paste the link and it will be added to your notes.
14. Once you are done taking notes, you can export them to MS Word.

Open your Word and click on Zotero.

Then click on "Insert Note" and select the citation style you want to use.

Zotero will give you a yellow search bar.
15. Type in a couple of relevant words and Zotero will give you a list of relevant notes in your library.

Select the notes you want to import and Zotero will paste them into your Word document.

Now you can start drafting your paper.
If you are new to Zotero, here's a tutorial on how to get started on it:

Found this tutorial helpful?

1. Scroll to the top and repost the first post to share it with your friends.

2. Follow me for more tutorials on Zotero.

• • •

Missing some Tweet in this thread? You can try to force a refresh
 

Keep Current with Mushtaq Bilal, PhD

Mushtaq Bilal, PhD Profile picture

Stay in touch and get notified when new unrolls are available from this author!

Read all threads

This Thread may be Removed Anytime!

PDF

Twitter may remove this content at anytime! Save it as PDF for later use!

Try unrolling a thread yourself!

how to unroll video
  1. Follow @ThreadReaderApp to mention us!

  2. From a Twitter thread mention us with a keyword "unroll"
@threadreaderapp unroll

Practice here first or read more on our help page!

More from @MushtaqBilalPhD

Jun 7
Finding papers for literature review, downloading them, and organizing them takes time, a lot of time.

Genspark's Download Agent automates this whole process.

It searches relevant papers, downloads, and organize them in folders with a single prompt.

Here's how to use it:
1. Go to and sign up for a free account. genspark.ai
2. In the search bar, type in your research topic and ask Genspark Super Agent to download relevant papers. That's it.

It will search the web and download the papers.
Read 11 tweets
Jun 2
Chat Academia now offers a FREE plan.

• Brainstorm research questions
• Run searches across multiple databases
• Generate literature maps
• Extract relevant information from papers

Here's how to use Chat Academia for free:A red rectangle highlights the free plan on Chat Academia's pricing page.
1. Go to and click on "Get started."

Select the free plan. chatacademia.com
2. Select "Research Gap Finder" and click on "Create session."

Type in the topic of your research project.

It will give you a list of potential research quesions. Go through them and select one you find more intersting.
Read 7 tweets
May 25
Finding common themes across papers and extracting relevant information takes a lot of time and effort.

Chat Academia now lets you do this in a matter of minutes.

Upload papers, identify themes, and it will give you a table with required information.

Here's how to use it: A table generated by Chat Academia containing columns for summary, obbjectives, conclusion, and intervention for multiple academic papers.
1. Go to and sign in to your account.

On the homepage, you will see an option "Paper Table." chatacademia.com
2. Click on "Paper Table" and then "Create a new table" in the top-right corner.
Read 11 tweets
May 16
Mapping connections between research topics and publications is a time-consuming task.

NextNet is an AI app that can help you with it. It lets you run visual searches for topics related to life sciences.

It's free and very easy to use: A graph generated by NextNet.
1. Go to getnextnet[.]com and click on "Get NextNet free."

Sign up for a free account.
2. Select "Explorer" in the left bar and type in your query.

NextNet will generate a graph containing nodes about diseases, drugs, genes, research publications, and so on.
Read 6 tweets
May 15
Finding research gaps takes a lot of time and labor.

Research Kick can help you with it.

It analyzes millions of papers in Google Scholar, Semantic Scholar, and PubMed to help you find research gaps — in minutes.

Here's how to use it: A screenshot of Research Kick showing that a research question has not been adequately answered in published literature.
1. Go to and click on "Get started."

Sign up with your email or Google account.

To use the app, you will need to buy a subscription plan:

10,000 credits for $9/month
120,000 credits for $99/year researchkick.com
2. This is how your Research Kick would look like.

It offers multiple LLMs including ChatGPT, Claude, Gemini.

Select a model you want to use.
Read 10 tweets
May 15
Most AI apps for research need paid subscriptions, but Bohrium is free.

• Integrates Deep Seek with databases containing 160M+ papers.

• Answers questions with references to published papers.

Here's how to use Bohrium to supercharge your literature discovery:
1. Go to bohrium(dot)com and click on "Log in" in the bottom-left corner.

Enter your email to sign up for a free account.
2. In the bottom of the chat box, you will see options for AI models and databases.

Bohrium has integrated databases for natural sciences, engineering, life sciences, and the humanities.

Select "DeepThink" for detailed answers.
Read 8 tweets

Did Thread Reader help you today?

Support us! We are indie developers!


This site is made by just two indie developers on a laptop doing marketing, support and development! Read more about the story.

Become a Premium Member ($3/month or $30/year) and get exclusive features!

Become Premium

Don't want to be a Premium member but still want to support us?

Make a small donation by buying us coffee ($5) or help with server cost ($10)

Donate via Paypal

Or Donate anonymously using crypto!

Ethereum

0xfe58350B80634f60Fa6Dc149a72b4DFbc17D341E copy

Bitcoin

3ATGMxNzCUFzxpMCHL5sWSt4DVtS8UqXpi copy

Thank you for your support!

Follow Us!

:(