Mushtaq Bilal, PhD Profile picture
Oct 24, 2024 20 tweets 7 min read Read on X
Zotero's new Note Editor can supercharge your note-taking and writing processes.

But many academics don't know about it.

Here's how to take notes with Zotero's Note Editor:
1. Open your Zotero desktop app and select a relevant collection.

Drag and drop the paper you want to read and take notes on.

Open the paper by double-clicking on it.
If you are new to Zotero, here are four ways you can add papers to your library:
2. Zotero will open the paper in a new window.

To your left, you will see an annotations panel, and to your right, the paper's metadata.

On the top of the paper, you will see annotation options.

In the right bar, you will see a small button for Zotero's Note Editor. A screenshot of Zotero's Note Editor.
3. While reading, you can highlight and underline important passages.

Select a passage and Zotero will give you highlight and underline options.

You can also color-code your annotations.

The highlighted/underlined passages will appear in the annotations panel.
4. You can add comments to the paper too.

Click on the paper-like icon on the top and place your cursor where you want to add a comment.

Then type in your comment in the annotations panel.
5. You can also add text in your PDF.

Click on the "T" on the top of the paper and place the cursor where you want to add text.

Type in the text and it will appear in the annotations panel.
6. If you are working with a scanned document that doesn't allow highlighting/underlining, you can use the "Select Area" option.

Click on the square on the top and select the area you want to highlight. It will be added to your annotations panel.
7. You can select text with a free drawing tool.

Select the pen-like icon on the top and mark the relevant text.

It will be added to the annotations panel.
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8. To open Zotero's Note Editor, click on the "Notes" button in the right bar.

You will see two options in the right panel: Item Notes and All Notes.

Item Notes are notes you take on a given paper and All Notes are all your notes in your Zotero library.
9. Click on the "+" in front of Item Notes and you will see two options: Add Item Note and Add Item Note from Annotations.

If you select the second option, Zotero will convert all your annotations into an editable note.
10. If you click on Add Item Note, Zotero will open a notepad for you with six options:

1. Formate Text
2. Text Color
3. Highlight Text
4. Clear Formatting
5. Insert Link
6. Insert Citation
11. Now you can start taking notes on the paper you are reading.
12. To add a citation, place the cursor where you want to insert one.

Then click on the "Insert Citation" button.

Zotero will open a red search bar with the name of the author whose paper is currently open.

Edit the citation if needed and press Enter and it will be added.
13. To add a hyperlink, select the relevant text and click on "Insert Link."

Paste the link and it will be added to your notes.
14. Once you are done taking notes, you can export them to MS Word.

Open your Word and click on Zotero.

Then click on "Insert Note" and select the citation style you want to use.

Zotero will give you a yellow search bar.
15. Type in a couple of relevant words and Zotero will give you a list of relevant notes in your library.

Select the notes you want to import and Zotero will paste them into your Word document.

Now you can start drafting your paper.
If you are new to Zotero, here's a tutorial on how to get started on it:

Found this tutorial helpful?

1. Scroll to the top and repost the first post to share it with your friends.

2. Follow me for more tutorials on Zotero.

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More from @MushtaqBilalPhD

Jan 5
How to build an academic writing habit (to write a lot and publish a lot):
In his book "Atomic Habits," James Clear writes about habits that are so small we don’t even notice them, but the power they have over us is immense.

He calls them atomic habits.

Although they are small, building atomic habits is VERY DIFFICULT.

Why? A photo of James Clear's book "Atomic Habits."
Clear calls the time between the point we start a habit to the point we start seeing its first results "the plateau of latent potential."

Most people remain stuck within this plateau.

To see the results of any habit, we must cross the plateau of latent potential. A photo of "The Plateau of Latent Potential" from James Clear's book "Atomic Habits."
Read 21 tweets
Dec 25, 2025
Don't use Sci-Hub — it's a "controversial" website with 84M+ research papers freely available.

We should all try to make billion-dollar academic publishers richer.

Anyway, here's a thread on how to integrate Sci-Hub with Zotero to get free papers.

🚨DO NOT DO IT!
1. Don't go to this link:
github(dot)com/syt2/zotero-scipdf

But if you do, replace the word "dot" with an actual [.]

Don't scroll down and click on "latest release xpi file."

This will download an "xpi" file to your computer.
2. Don't open your Zotero. But if you do, click on "Tools."

In "Tools," click on "Plugins." This will open Zotero's Plugin Manager.

In the Plugin Manager, click on the gear-like icon and select "Install Plugin From File."

Navigate to the XPI file you downloaded and add it.
Read 6 tweets
Dec 24, 2025
10 books to help you become a better academic writer so you can write a lot and publish a lot:

1. Academic Writing as if the Reader Matters by Leonard Cassuto

Practical tips on how to make your academic writing more engaging and readable. Examples from the arts and sciences. Academic Writing as if the Reader Matters by Leonard Cassuto
2. The Clockwork Muse by Eviatar Zerubavel

Helpful advice on how to organize your writing process in terms of time.

A-Time: for writing new material (deep work)
B-Time: for shallow work like compiling bibliography, etc.
C-Time: for house chores The Clockwork Muse by Eviatar Zerubavel
3. Write Your Dissertation in Fifteen Minutes a Day by Joan Bolker

Excellent tips on how and why you should write zero drafts.

Teaches you how to understand different stages of the writing process from ideation to drafting to revision. Write Your Dissertation in Fifteen Minutes a Day by Joan Bolker
Read 11 tweets
Dec 15, 2025
Dr Ally Louks's viral PhD thesis (130M views) on the politics of smell redefined the way people talk about smell.

Everyone wants to read her thesis, but it's unavailable until 2028

Here are 10 books on the politics of smell that you can read right now:

1. The Smell of Slavery A photo of Dr Ally Louks with her PhD thesis titled, "Olfactory Ethics: The Politics of Smell in Modern and Contemporary Literature."
The Smell of Slavery: Olfactory Racism and the Atlantic World by Andrew Kettler
1. The Smell of Slavery by Andrew Kettler

Shows how white slave owners defined Black, African bodies as noxious and deserving of enslavement.

Smell was used to dehumanize Black folks who were equated with animals by white slave owners. The Smell of Slavery: Olfactory Racism and the Atlantic World by Andew Kettler
2. The Foul and the Fragrant by Alain Corbin

Considered a foundational text in smell studies.

Shows how the bourgeois nose associated bad smells with the poor and how deodorization became a tool for state control in 18th and 19th century France. The Foul and the Fragrant by Alain Corbin
Read 11 tweets
Dec 2, 2025
Getting past peer review is a challenge every researcher faces.

Stanford researchers recently launched a free AI-powered Agentic Review that can help you with it.

It gives you a human-level mock peer review so you can polish your paper before submitting it.

Check it out 👇
1. Go to paperreview[.]ai and upload your manuscript.

Enter your email and specify your target venue (conference or journal).

You may also want to copy the "Review Token" in case you don't receive an email.
2. A few minutes later you will receive an email with a link to the review report.

Go through the review report and revise your paper according to the suggestions you think are most relevant.
Read 4 tweets
Oct 6, 2025
Libgen, Sci-Hub, and Z-library had millions of pirated academic books and papers.

So, they were shut down. We shouldn't use them anyway.

We should help billion-dollar academic publishers get richer.

Anyway, here's how to access these libraries:

Don't do this!
1. Don't go to open-slum[.]org.

Because there you will see links to LibGen, Anna's Archive, Z-Library, and Sci-Hub.
2. Don't click any link because that will open your desired library.

Don't type the title of a book you want to read because it might show up.

Look at this, someone has pirated my own book. I'm livid!
Read 5 tweets

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