Mushtaq Bilal, PhD Profile picture
Feb 2, 2025 19 tweets 6 min read Read on X
How to organize and summarize research papers with Zotero and Scholarcy:

You can learn this workflow in 15 minutes.
1. Open your Zotero desktop app and click on "File" and select "New Collection."

Choose a name for your collection. Keep the collection open.
2. If you haven't already, you'd need to install the Zotero Connector.

Go to Chrome web store and look for "Zotero Connector."

Add it to your Chrome and then pin it.

The Connector is available for Edge, Firefox, and Safari.
3. Look up papers relevant to your project in Google Scholar.

Click on the Zoteor Connector in the top-right corner and it will open an "Item Selector."

Select the papers you find useful and click on "OK."

Selected papers will be added to the collection you just created.
4. You can also look up papers in your university's online library or a database like PubMed.

Then add papers to your collection using Zotero Connector.
5. Go your Zotero collection and you will see the papers have been added.

Zotero will retrieve open access PDFs and add them to the collection.

If Zotero doesn't retrieve, you can add a PDF yourself. Simply drag and drop the PDF.
6. Double-click on a paper to open it in Zotero. You can read the paper and take notes on it if you want to.
7. To summarize paper, go to scholarcy[.]com and sign up for an account.

Scholarcy offers both free and paid plans.
8. Once you've logged in to Scholarcy, click on "Profile" and scroll down a bit.

Click on "Connect Zoteor account" and then click on "Accept Defaults."

Now your Zotero is connected with Scholarcy.
9. Click on "Create library" in the top-right corner and choose a name for your library.
10. Click on the library you just created and select "Click to import."

Click on "Cloud storage" and select "Zotero."

Select "Collections" on the top and Scholarcy will show you all your Zotero collections.

Select the relevant collection.
11. Select the papers you want to import to Scholarcy and click on "Import."

Scholarcy will take a few seconds to process the imported papers.

If a paper doesn't get imported, you can simply drag and drop its PDF in your Scholarcy library.
12. Once the papers have been processed, click on a paper and Scholarcy will give you its summary.

You can navigate to different sections using the tabs in the left sidebar.
13. You can change reading levels of summaries by clicking on "Enhacne."

Scholarcy has different reading levels: general reader, highschool student, undergraduate, researcher, and bullet point lover.

You can also ask it to focus on a specific point by selecting "Focused on..."
14. Within the summaries, Scholarcy will hyperlink difficult words and terms to Wikipedia articles.

This feature will save you a lot of time.
15. Once you've read a few papers, open a Word file and start writing.

To insert a citation, place the cursor where you want it to be. Click on the Zotero tab and select "Add/Edit Citation."

Enter the name of the author you want to cite.

Zotero will prepare the citation. Hit Enter and it'll be added.
16. Once you are done drafting, place the cusor where you want to add bibliopgrahy.

Then click on "Add/Edit Bibliography."

Zotero will add the bibliograhy in your selected style.
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Registration details below:

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More from @MushtaqBilalPhD

Jan 5
How to build an academic writing habit (to write a lot and publish a lot):
In his book "Atomic Habits," James Clear writes about habits that are so small we don’t even notice them, but the power they have over us is immense.

He calls them atomic habits.

Although they are small, building atomic habits is VERY DIFFICULT.

Why? A photo of James Clear's book "Atomic Habits."
Clear calls the time between the point we start a habit to the point we start seeing its first results "the plateau of latent potential."

Most people remain stuck within this plateau.

To see the results of any habit, we must cross the plateau of latent potential. A photo of "The Plateau of Latent Potential" from James Clear's book "Atomic Habits."
Read 21 tweets
Dec 25, 2025
Don't use Sci-Hub — it's a "controversial" website with 84M+ research papers freely available.

We should all try to make billion-dollar academic publishers richer.

Anyway, here's a thread on how to integrate Sci-Hub with Zotero to get free papers.

🚨DO NOT DO IT!
1. Don't go to this link:
github(dot)com/syt2/zotero-scipdf

But if you do, replace the word "dot" with an actual [.]

Don't scroll down and click on "latest release xpi file."

This will download an "xpi" file to your computer.
2. Don't open your Zotero. But if you do, click on "Tools."

In "Tools," click on "Plugins." This will open Zotero's Plugin Manager.

In the Plugin Manager, click on the gear-like icon and select "Install Plugin From File."

Navigate to the XPI file you downloaded and add it.
Read 6 tweets
Dec 24, 2025
10 books to help you become a better academic writer so you can write a lot and publish a lot:

1. Academic Writing as if the Reader Matters by Leonard Cassuto

Practical tips on how to make your academic writing more engaging and readable. Examples from the arts and sciences. Academic Writing as if the Reader Matters by Leonard Cassuto
2. The Clockwork Muse by Eviatar Zerubavel

Helpful advice on how to organize your writing process in terms of time.

A-Time: for writing new material (deep work)
B-Time: for shallow work like compiling bibliography, etc.
C-Time: for house chores The Clockwork Muse by Eviatar Zerubavel
3. Write Your Dissertation in Fifteen Minutes a Day by Joan Bolker

Excellent tips on how and why you should write zero drafts.

Teaches you how to understand different stages of the writing process from ideation to drafting to revision. Write Your Dissertation in Fifteen Minutes a Day by Joan Bolker
Read 11 tweets
Dec 15, 2025
Dr Ally Louks's viral PhD thesis (130M views) on the politics of smell redefined the way people talk about smell.

Everyone wants to read her thesis, but it's unavailable until 2028

Here are 10 books on the politics of smell that you can read right now:

1. The Smell of Slavery A photo of Dr Ally Louks with her PhD thesis titled, "Olfactory Ethics: The Politics of Smell in Modern and Contemporary Literature."
The Smell of Slavery: Olfactory Racism and the Atlantic World by Andrew Kettler
1. The Smell of Slavery by Andrew Kettler

Shows how white slave owners defined Black, African bodies as noxious and deserving of enslavement.

Smell was used to dehumanize Black folks who were equated with animals by white slave owners. The Smell of Slavery: Olfactory Racism and the Atlantic World by Andew Kettler
2. The Foul and the Fragrant by Alain Corbin

Considered a foundational text in smell studies.

Shows how the bourgeois nose associated bad smells with the poor and how deodorization became a tool for state control in 18th and 19th century France. The Foul and the Fragrant by Alain Corbin
Read 11 tweets
Dec 2, 2025
Getting past peer review is a challenge every researcher faces.

Stanford researchers recently launched a free AI-powered Agentic Review that can help you with it.

It gives you a human-level mock peer review so you can polish your paper before submitting it.

Check it out 👇
1. Go to paperreview[.]ai and upload your manuscript.

Enter your email and specify your target venue (conference or journal).

You may also want to copy the "Review Token" in case you don't receive an email.
2. A few minutes later you will receive an email with a link to the review report.

Go through the review report and revise your paper according to the suggestions you think are most relevant.
Read 4 tweets
Oct 6, 2025
Libgen, Sci-Hub, and Z-library had millions of pirated academic books and papers.

So, they were shut down. We shouldn't use them anyway.

We should help billion-dollar academic publishers get richer.

Anyway, here's how to access these libraries:

Don't do this!
1. Don't go to open-slum[.]org.

Because there you will see links to LibGen, Anna's Archive, Z-Library, and Sci-Hub.
2. Don't click any link because that will open your desired library.

Don't type the title of a book you want to read because it might show up.

Look at this, someone has pirated my own book. I'm livid!
Read 5 tweets

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