Mushtaq Bilal, PhD Profile picture
Feb 2 19 tweets 6 min read Read on X
How to organize and summarize research papers with Zotero and Scholarcy:

You can learn this workflow in 15 minutes.
1. Open your Zotero desktop app and click on "File" and select "New Collection."

Choose a name for your collection. Keep the collection open.
2. If you haven't already, you'd need to install the Zotero Connector.

Go to Chrome web store and look for "Zotero Connector."

Add it to your Chrome and then pin it.

The Connector is available for Edge, Firefox, and Safari.
3. Look up papers relevant to your project in Google Scholar.

Click on the Zoteor Connector in the top-right corner and it will open an "Item Selector."

Select the papers you find useful and click on "OK."

Selected papers will be added to the collection you just created.
4. You can also look up papers in your university's online library or a database like PubMed.

Then add papers to your collection using Zotero Connector.
5. Go your Zotero collection and you will see the papers have been added.

Zotero will retrieve open access PDFs and add them to the collection.

If Zotero doesn't retrieve, you can add a PDF yourself. Simply drag and drop the PDF.
6. Double-click on a paper to open it in Zotero. You can read the paper and take notes on it if you want to.
7. To summarize paper, go to scholarcy[.]com and sign up for an account.

Scholarcy offers both free and paid plans.
8. Once you've logged in to Scholarcy, click on "Profile" and scroll down a bit.

Click on "Connect Zoteor account" and then click on "Accept Defaults."

Now your Zotero is connected with Scholarcy.
9. Click on "Create library" in the top-right corner and choose a name for your library.
10. Click on the library you just created and select "Click to import."

Click on "Cloud storage" and select "Zotero."

Select "Collections" on the top and Scholarcy will show you all your Zotero collections.

Select the relevant collection.
11. Select the papers you want to import to Scholarcy and click on "Import."

Scholarcy will take a few seconds to process the imported papers.

If a paper doesn't get imported, you can simply drag and drop its PDF in your Scholarcy library.
12. Once the papers have been processed, click on a paper and Scholarcy will give you its summary.

You can navigate to different sections using the tabs in the left sidebar.
13. You can change reading levels of summaries by clicking on "Enhacne."

Scholarcy has different reading levels: general reader, highschool student, undergraduate, researcher, and bullet point lover.

You can also ask it to focus on a specific point by selecting "Focused on..."
14. Within the summaries, Scholarcy will hyperlink difficult words and terms to Wikipedia articles.

This feature will save you a lot of time.
15. Once you've read a few papers, open a Word file and start writing.

To insert a citation, place the cursor where you want it to be. Click on the Zotero tab and select "Add/Edit Citation."

Enter the name of the author you want to cite.

Zotero will prepare the citation. Hit Enter and it'll be added.
16. Once you are done drafting, place the cusor where you want to add bibliopgrahy.

Then click on "Add/Edit Bibliography."

Zotero will add the bibliograhy in your selected style.
Want to learn more about how to supercharge your academic writing with AI?

Registration for my 1 Mar webinar is now open. 2,200+ academics have attended this webinar.

Registration details below:

Use "SUPER25" for a 25% discount.

eventbrite.dk/e/supercharge-…
Found this thread helpful?

1. Scroll to the top and repost the first tweet to share it with your friends.

2. Follow me for more threads on how to use AI apps for academic purposes.

• • •

Missing some Tweet in this thread? You can try to force a refresh
 

Keep Current with Mushtaq Bilal, PhD

Mushtaq Bilal, PhD Profile picture

Stay in touch and get notified when new unrolls are available from this author!

Read all threads

This Thread may be Removed Anytime!

PDF

Twitter may remove this content at anytime! Save it as PDF for later use!

Try unrolling a thread yourself!

how to unroll video
  1. Follow @ThreadReaderApp to mention us!

  2. From a Twitter thread mention us with a keyword "unroll"
@threadreaderapp unroll

Practice here first or read more on our help page!

More from @MushtaqBilalPhD

Feb 3
Just got access to ChatGPT's Deep Research function and tried it with a long prompt👇

The prompt asks ChatGPT to collect data from a specific database, analyze it, and write a report. Also mentions a website that shouldn't be used.

Took a while but the results are very impressive🤯A screenshot of a long prompt the Mushtaq used with ChatGPT's Deep Research.
The first time you run a prompt like this, Deep Research asks you for certain clarifications.

I answered its questions and then it got to work.

It looked up 57 sources before it started compiling its answer.

Looking up relevant sources took it around 10 minutes. But compiling took it around an hour. It's a bit slow at the moment but that's expected. It will surely become more efficient.
The results are very impressive.

For starters, there are little to no hallucinations. This alone is a remarkable advancement.

It was able to look up that are easily available like the number of convictions.

But it couldn't go within the database to look up desired stats like the number of immigrants from a particular country. For that it relied on other sources and Wikipedia.

This will also improve in the days to come.
Read 5 tweets
Jan 31
ChatGPT just rolled out updated custom instructions.

This makes it very easy to customize ChatGPT for academic work.

And also to get rid of fake citaitons to papers that don't exist.

Here's how to customize ChatGPT (template included): A screenshot of ChatGPT's new custom instructions.
1. Open ChatGPT and click on your avatar in the top-right corner.

Select "Customize ChatGPT" from the drop-down menu. Then enable custom instructions for new chats.

You will see four questions.
2. In the field, "What should ChatGPT call you?" enter your name.

In the field, "What do you do?" write a bit about your work.

Here's a template you can use:

I am an academic researcher. My primary field of research is [...] with a focus on [...]. I have also published research on [...]. In addition, I do [...]. I have also taught course on [...].
Read 9 tweets
Jan 26
Trump is threatening Denmark over Greenland.

I lived in the US 🇺🇸 for several years and now I live in Denmark 🇩🇰

Here's a comparison of the two countries (based on my experiences):

1. Free Health A screenshot of a Financial Times article titled, "Donald Trump in fiery call with Denmark’s prime minister over Greenland."
🇺🇸You or your employer have to pay for health insurance. The US is the only country in the developed world without universal healthcare. More than 100 million Americans are in medical debt.

🇩🇰Denmark has universal healthcare. Anyone living in Denmark — citizen or alien — is issued with a yellow-colored health card with the name of their primary care doctor. You can see your doctor at no charge.

If your doctor refers you to a specialist and they have a long waitlist, you can see a private doctor. In that case, the municipality (kommune) will pay for your treatment.

Dental, chiropractic, and prescriptions are also subsidized.
2. Dental Care for Children

🇺🇸You have to pay for your children's dental care and treatment.

🇩🇰Children under 18 receive free dental care. If your child's dentist recommends braces, they can get them for free. You may have to wait for a few months or a year though.

You can see a private dentist too, if you want to.

Even private dental treatments in Denmark are more affordable than in the US.
Read 21 tweets
Jan 25
China's Deep Seek is as good as ChatGPT o1.

Plus, it's open source and free to use.

Here are eight ways you can use Deep Seek for academic purposes: A graph comparing Deep Seek with ChatGPT o1.
1. Brainstorming Ideas

Ask a couple of "warm up" questions.

Do you know about X or Y. Then ask how X can be used in a specific case.

Since it's connected to the internet, it will also give you relevant links.
2. Outline a Research Project

Start by asking:
Do you know about X or Y?
How can I understand X from a Z theoretical perspective.

After a few questions, tell Deep Seek you want to write a paper on that topic. Then ask for an outline.

This way you'll get a very good outline.
Read 11 tweets
Jan 24
ChatGPT just introduced Operator, an AI Agent that can do browse the internet on its own and do tasks for you.

This means literature reviews will soon be outsourced to customized AI Agents supervised by experts. Plus, little to no hallucinations.

Here's a review of Operator👇 A screenshot of the landing page of ChatGPT Operator.
1. To use it, go to operator[.]chatgpt[.]com

Operator requires a ChatGPT Pro subscription for $200/m. It's available only in the US at the moment.

I asked Operator how it can help in my academic work. It gave me a short list of things.
2. I asked it to look up sources on a give topic.

It opened its own browser, ran a Bing search, clicked on the relevant links, read them, and complied an answer.

In this case, you can see, it relied on a Wikipedia article.
Read 9 tweets
Dec 31, 2024
NotebookLM lets you create podcasts based on research papers.

Now you can also join these podcasts as a guest.

Here's how to do it:
1. Go to notebooklm[.]google[.]com and click on "Create new."

Upload a paper and NotebookLM will give you its summary.
2. In the column to your right, you will see "Audio Overview."

Click on "Customize" and add any instrcution on what the podcast should focus on.

Then click on "Generate."
Read 8 tweets

Did Thread Reader help you today?

Support us! We are indie developers!


This site is made by just two indie developers on a laptop doing marketing, support and development! Read more about the story.

Become a Premium Member ($3/month or $30/year) and get exclusive features!

Become Premium

Don't want to be a Premium member but still want to support us?

Make a small donation by buying us coffee ($5) or help with server cost ($10)

Donate via Paypal

Or Donate anonymously using crypto!

Ethereum

0xfe58350B80634f60Fa6Dc149a72b4DFbc17D341E copy

Bitcoin

3ATGMxNzCUFzxpMCHL5sWSt4DVtS8UqXpi copy

Thank you for your support!

Follow Us!

:(